Sphingobacterium daejeonense: NCTC13534_02585
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Entry
NCTC13534_02585 CDS
T06632
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NCTC13534_02585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdj03021
]
NCTC13534_02585
Transcription machinery [BR:
sdj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC13534_02585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
Sigma70_r2
GerE
KorB
DUF2439
DUF1492
Motif
Other DBs
NCBI-ProteinID:
VTP96847
LinkDB
All DBs
Position
1:complement(2198394..2198948)
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AA seq
184 aa
AA seq
DB search
MNHSVSTSDRNLYINFYKYINFYAFKLTGNYSYAEDLTHDAFTSYFANKSKVSENPAAIK
SFLYSSVRNKIINEHKRTKVNDRYWQKTGFNEQDSLELDRVLIYTELLAEVERLVNNLPE
MCRKVIKLSFFEGLSNSEIKDNLNISINTVKTHKKRGLAYLQKNLNPEYYLIFVAIINQE
LKLF
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atgaaccattcagtctccacgtctgacagaaacttgtacattaatttttacaaatacata
aatttttatgcatttaaattaacaggcaattattcctatgctgaggatttaacacatgat
gcatttacctcatattttgctaacaaatcaaaagtttccgaaaacccagcagctattaaa
tcgttcttatacagttctgtgagaaataaaattattaacgaacataaaagaacaaaagta
aatgatagatattggcaaaaaacaggattcaacgaacaagactctttagagttggataga
gtacttatttacacagaacttttggcagaagtggaaagattagtgaataatctaccggaa
atgtgtagaaaagttataaaattgagtttctttgaaggtttatctaatagtgaaattaaa
gacaatctcaatatcagtatcaatactgtaaaaacccataaaaaaagaggcttagcctat
ttgcagaaaaatctaaatccagaatattatctcatattcgttgcgataattaatcaagaa
ttaaaattattttaa
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