Sphingobacterium daejeonense: NCTC13534_05152
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Entry
NCTC13534_05152 CDS
T06632
Symbol
mfd_1
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13534_05152 (mfd_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdj03400
]
NCTC13534_05152 (mfd_1)
Enzymes [BR:
sdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13534_05152 (mfd_1)
DNA repair and recombination proteins [BR:
sdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC13534_05152 (mfd_1)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
DUF3638
Motif
Other DBs
NCBI-ProteinID:
VTQ06887
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All DBs
Position
1:4304636..4307284
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AA seq
882 aa
AA seq
DB search
MNVQELLNKYSHSQQVQNFADSIKEGKPKVHLKGLVGSSDAMVAAATYQIEKRLNVFILP
THEEASYFLSDLESLFDNQILFFPASYRKAFEFTILDSANVLQRAETLSSLNRNSELPRI
VVTYPEAISEKVINKQDLEKNTLVIRVETKLSIDFINEFLYEYDFERVDFVYEPGQFAIR
GGIVDIFSFSNDLPYRIEFFGDEIESIRTFDIESQLSVNKINSVTIVPNVQAKFLSNNHI
SLLEYIDKDSIIWLKDVQFTLDIIKEGYKKSSQYWKALTEKEIKDNPDWVDPRFTFTDDK
NFNAMLFEYPVVEFGKQFFYKPDVELSFDTHPQPSFNKDFSLLIHNFHENEKHAIQNYIF
SDSTKQIERIYAILEDLDKNVSFTPIYKALREGFRDDNLKVACYTDHQVFDRYYKYKRRK
GYERSQAITLKELSELKPGDYITHIDHGVGKYAGLEKVDVNGKSQEMIRLVYADNDLLYV
NINSLNRISKYSGKEGTVPKMNKLGTDAWEKLKRTTKKKVKDIARDLIMLYAKRKAQTGN
AFSPDTYLQRELEASFIYEDTPDQEKATADVKKDMESPHPMDRLVCGDVGFGKTEVAIRA
AFKAVADSKQVAVLVPTTILALQHYRTFSERLKGLPANIDYINRFKSSKQIKETLKKLEE
GKVDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVSVKEKLKVMRANVDSLTLTATPIPR
TLHFSLMGARDLSIISTPPPNRQPVQTELHVFNETLIKEAVSFEIDRGGQIFFIHNRVAD
LPQLGMLIRKLVPGAKVGIAHGQLEGDELEDVMLKFINHEYDVLIATTIIEAGLDIPNAN
TIIINQAHMFGLSDLHQMRGRVGRSNKKSILLPVEPTFIDSN
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttcaagaactattaaataaatacagccattcccaacaagtacaaaactttgca
gatagtatcaaagaaggaaaacccaaagtccatttaaaaggacttgttggttcttcagat
gccatggtagctgctgctacctaccaaattgagaaaagattaaatgtatttatccttcct
actcatgaagaagcatcttattttttgagcgacttggagagcttattcgataatcagatc
ttgttttttccagcctcttatcggaaagcatttgaatttactatcctagatagcgccaat
gtactccagcgtgcagaaactcttagctctttaaaccgaaattctgaattgccaagaatt
gttgttacatatcctgaagcaatatcggaaaaggttatcaataaacaggatctggaaaaa
aataccctcgtaattagggtcgaaactaaattaagtatcgactttatcaatgagttttta
tatgaatatgatttcgaacgagtagattttgtatatgaacccgggcaatttgcgatcagg
ggtggtattgtcgatattttttcgttttcaaatgatttgccttatcgaatagaatttttt
ggtgatgaaattgaaagtataaggacttttgatattgaatcacaactatctgtaaacaag
ataaactcggtaaccatcgttccgaacgttcaagcaaaattcttgagcaacaatcatatc
tctctgcttgaatatatcgacaaagattctatcatctggctaaaagatgtccaatttacc
ttggatatcattaaagaaggatataagaaatcttcccaatattggaaagcattaacagaa
aaggaaattaaagataacccagattgggtggatccaaggtttacttttacggacgacaaa
aacttcaatgcaatgttgttcgaatatcctgttgtcgaattcggaaaacaatttttttat
aaacctgatgttgagctatcatttgatactcatcctcaaccctcattcaacaaggatttt
agcttgctgattcataattttcatgaaaatgaaaagcatgcaattcaaaattatattttt
tcagattctactaaacaaatcgaaaggatatatgcaatccttgaagaccttgataagaat
gtatcattcactcctatctacaaagcgttacgcgaaggttttcgagatgacaatctcaaa
gtagcttgctatacggaccatcaagtttttgaccgttattataaatataaaaggagaaaa
ggttacgaaagatcgcaggccataaccttaaaagaattaagtgagttaaaacctggtgat
tatattacccatattgaccacggggttgggaaatacgcaggtttagaaaaggttgatgtt
aatggaaaaagccaggaaatgattcgcctggtttatgcggacaatgatttgctttatgtt
aatatcaactctttaaaccgtatttctaaatactctggtaaagaaggtacagtacccaag
atgaataaactggggactgatgcttgggagaaattaaaaagaacgaccaagaaaaaggtt
aaggacattgctcgggacctgattatgctgtatgctaaaagaaaggcacaaactggtaat
gcatttagtccagacacttatttgcagcgggaattggaggcttcctttatttacgaagat
acccccgatcaagaaaaagcaacagcggatgtaaaaaaagatatggaatctccacatcct
atggaccggttggtctgtggcgatgttggttttggaaaaactgaggttgccatccgcgct
gccttcaaagcagttgctgacagcaaacaagtagcggtcttggttcccacaacaattctt
gcattacaacattaccgaactttctcggaacgcttgaaaggattgccagcaaatattgat
tatatcaatcgtttcaaatccagcaaacagattaaagaaactcttaaaaaactcgaagaa
ggtaaagtagacatcattattgggacccaccgtttggtgagcaaagatgttaaattcaaa
gatctcggattgatgattattgatgaagagcaaaaatttggagtttctgtaaaagaaaag
ctgaaggtaatgcgtgcaaacgtagattcattgaccttgacagctaccccaattccaagg
actttacacttctcattgatgggcgccagagatttaagtattatttctacacctccgccg
aatagacaacctgtacaaactgaacttcacgttttcaatgaaactttaattaaagaagcg
gtaagttttgaaatagaccgtggaggtcaaatattttttatccataatcgagtggcagac
ctcccgcaactaggtatgctgatcagaaaattggtaccgggggcaaaagtcggaatcgct
catggacaattggagggtgatgagttggaagatgttatgttaaaattcatcaaccatgag
tatgatgtattgattgccacaaccatcattgaagctggcttggacattccaaatgctaat
acgatcataataaaccaagcccatatgttcgggttaagcgacttacaccaaatgagagga
cgagtaggaagatcgaataaaaaaagcattctgttacctgttgagcccacctttatcgac
tctaactag
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