Shewanella dokdonensis: KHX94_01920
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Entry
KHX94_01920 CDS
T07469
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KHX94_01920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_01920 (mfd)
Enzymes [BR:
sdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KHX94_01920 (mfd)
DNA repair and recombination proteins [BR:
sdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KHX94_01920 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
LysR_substrate
Glyco_tran_WecG
ERCC3_RAD25_C
UB2H
RecG_dom3_C
DUF3583
Motif
Other DBs
NCBI-ProteinID:
QVK23546
LinkDB
All DBs
Position
413521..416985
Genome browser
AA seq
1154 aa
AA seq
DB search
MTAFSVLAPESATKAGDIRYLGLPEGVARALTLASLARQHAGISLLVTADTPTALTLEAE
LRYLLADDMPVWLFPDRETLPYDSFSPHQDLISQRLETLSRLPGAQKALVIVPVTTLMVR
LPPQAFLSANVMLLKKGDHYPLQQMREHLVNAGYHLVGQVYEHGEFAIRGSILDIFPMGS
PAPLRIELFDDEVESIRYFDADTQLSQDPVTAIRMLPAREFPTDDAAIEGFRLRYRRYFE
VVVKEPESVYQQVSRHLMPAGIENYLPLFFDETASLFDYLGGKIQLLTIGDLQSAADEHL
AQVQHRYEDRKVDPLRPLLAPKDLYLLTDQLFGSFKQLPRVQLDSVSNHKHQVLAAVNPL
PDLTVNHKHKQPLAALADFVAQHRKILFSAETEGRREALLELLAKIGLKPQQFSSIKAFL
NSPESIGLLVSPLSIGCQLQQPALSIICETELFGIRIAQQRRRDKQRQVSQDALVRDLAE
LKVGQPIVHLEHGVALYQGLETLDAGGMIAEYLKLEYAGGDKLYVPVSSLHLISRYTVGP
DQQPGLNKLGNDTWDKARKKAIERIRDVAAELLDIYARRQSRPGVAAKLVPEDYAVFAQS
FPFEETVDQETAIDAVLNDMQSSVAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLV
PTTLLAQQHYENFKDRFADWPVRIEVMSRFRTAKEQQQVIDALAEGKVDIVIGTHKLLNS
DVRFEDLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPAKRLAVKTFVREYDKNTVREAIQREILRGGQVYFLHNNVETIEKAAADIRELVPQA
QVVVAHGQMRERELERVMSDFYHRRYNVLVCTTIIETGIDVPSANTIIIERADMFGLAQL
HQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEIRGAG
ELLGEEQSGHISKIGFSLYMDMLESAVNALKQGKEPSLAQMLNEQCEMDLRLPALLPEDY
VGDVNIRLSLYKRIANCRSETALDELKVELIDRFGLLPEATRNLMQLTLLKHQATVLGIK
KLEMHDRGGSLEFRDDHLIDPGFIIGLLQSQPQIYRMDGPNKLKFTLATEGSKQRLEMTS
LLLQQLAQHTVGDR
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgactgctttttctgttctggcacccgagagtgccaccaaagccggagacatccgttat
ctcggcttaccggaaggtgttgcccgcgcactgacgttagcatcactggcacgacagcat
gccgggatcagtttgctggtcaccgccgatacgccaacggcattgacgctggaagctgaa
ctgcgttatctactggccgatgacatgccggtatggctgtttcctgatcgggaaactctg
ccttacgacagtttttcgccacatcaggacttgatttcacaacggctggaaaccctgtcg
cggctacctggtgcccaaaaagcgctagttattgtgccagtcaccaccttgatggtcaga
ttaccgccacaggcatttctcagtgccaatgtgatgctgctgaaaaagggtgaccactat
ccgttacagcagatgcgcgaacatctggtcaatgccggttatcatctggtgggccaggtt
tacgagcacggcgagtttgctattcgcggttccattctggatatttttccgatgggctcg
cccgcgcctttgcgtatcgaactgtttgatgatgaagtggaatctatccgctacttcgat
gctgacacccagttatcacaagatccggtcactgcaatccgcatgttaccggcgcgtgag
tttccaaccgatgacgcggcgattgaaggcttccgcctacgctaccgccgctactttgaa
gtagtggtcaaagaaccggaatcggtatatcagcaagtgagtcggcatctgatgcctgcc
ggcatcgaaaattacctaccactgtttttcgatgaaaccgccagcctgttcgattatctg
ggcggcaaaatccaactgctgaccattggcgatttacaaagcgccgccgatgaacacttg
gcgcaagtacagcaccgctatgaagatcgtaaagtcgatccactgcggccattgctggcc
cccaaagatctgtacctgttaaccgatcaactgtttggtagttttaaacaactgccgcgg
gtgcagctagatagtgtcagcaatcacaaacatcaggtacttgctgccgtcaacccgctg
ccagacttaacggttaatcacaaacacaaacaaccgttagccgcactggcagactttgtt
gcgcaacaccgcaaaatcctgttcagtgccgaaaccgaaggtcgccgcgaagccttgctg
gaactgctggcaaaaattggtctaaagccacagcagttcagcagtatcaaggcatttctt
aatagcccagagtctatcggtttgctggtgtcgccgttatccattggctgtcaattgcaa
cagccagcgttaagcatcatctgtgaaactgagctgtttggcatccgcattgcgcagcaa
agacgccgtgataaacagcgccaagtcagccaagatgcgctggtgcgcgatttggcggag
ctaaaggtcggacagccgatagtgcatctggaacacggagtagccttgtatcaagggctg
gaaacactcgatgccggtggcatgattgccgagtatttaaagctggaatatgccggtggc
gacaagctttacgtgccagtttcatcactgcatcttatcagccgttataccgtggggccg
gatcagcaaccgggcttaaacaaactcggcaatgacacctgggataaagcccgtaaaaag
gccattgaacgcattcgcgatgtggcggcggaattactggacatttatgcccgcaggcaa
tcgcgtcccggcgttgccgctaaactggtgccagaagattatgctgtttttgcccagagt
tttccgtttgaagaaaccgtcgatcaggaaaccgctatcgatgccgtgctgaacgatatg
caatcgtcagtggcgatggatcggctggtatgtggtgatgtgggctttggtaaaaccgaa
gttgccatgcgcgcggcgtttgtggccgtaaatgcgggcaaacaagtcgtggtgttagtg
cccactaccctattggcgcagcagcactacgaaaatttcaaagacagatttgccgactgg
ccagtccgcatagaggtgatgtcgcgtttccgcactgctaaagagcaacaacaagtgatt
gacgcactggctgaaggcaaagtggatatcgtcatcggcactcataaactgctcaactcc
gatgttcgttttgaagaccttgggctgttggtgatcgatgaagaacaccgctttggcgtg
cgccaaaaagagaaaatcaaggcacttagagccaatgtggatattctgacgctcacggct
acgccaattccacgcaccctcaacatggcgatgtcgggcatgcgcgatctgtcgattatt
gccaccccacccgcgaaacggctggcggttaaaacttttgtccgcgaatacgataaaaat
accgtacgcgaagcgattcaacgtgaaattctccgtggtggtcaggtgtattttctgcac
aacaatgtggaaaccattgaaaaagccgctgccgatattcgtgaattagtgccgcaggca
caggtagtggttgctcacggacagatgcgagaacgggaattggagcgcgtcatgtccgat
ttctatcaccgtcgctacaacgtgttggtgtgtaccacgattatcgaaaccgggattgat
gtgcccagtgccaataccattatcattgagcgcgccgatatgttcgggctggcacaactg
catcaattgcgtggccgcgtaggtcgttcccatcaccaggcttatgcctatttgatgaca
ccgcatccaaagcggatgacaaccgatgcgcgtaaacgtctggaagcgattgatgctttg
gaagacctaggcgccggttttatgctggcaacgcaggacttggaaattcgcggcgcgggg
gaattactcggcgaagaacaaagcggccatatctccaaaattggtttcagcctgtacatg
gacatgctggaatccgccgtcaacgccctaaaacaaggcaaagaaccatcgctggcacaa
atgctcaatgaacagtgtgagatggacttacggctaccagcgctgctgccagaggattat
gtcggtgacgttaatatccgcttgtcgctttacaagcgtattgccaactgccgcagtgaa
accgccttggatgagctgaaagtggaactgattgaccgctttggcctgttaccggaagcc
acccgcaatctaatgcaactgacgttactgaaacatcaagccaccgtattaggtattaag
aagctagagatgcatgaccggggcggcagcctggaatttcgcgatgatcatctgatcgat
ccgggattcattatcggcttactgcagtcgcaaccacaaatctatcgaatggacggcccg
aataagttaaagttcacgttagcgactgaaggcagtaagcagcgattggaaatgacttcg
ttattgctgcaacagctggcacaacacacagtgggagacagatag
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