Shewanella dokdonensis: KHX94_07745
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Entry
KHX94_07745 CDS
T07469
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KHX94_07745 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdk03021
]
KHX94_07745 (rpoC)
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_07745 (rpoC)
Enzymes [BR:
sdk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KHX94_07745 (rpoC)
Transcription machinery [BR:
sdk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KHX94_07745 (rpoC)
DNA repair and recombination proteins [BR:
sdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KHX94_07745 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QVK24376
LinkDB
All DBs
Position
complement(1617062..1621273)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDLIRSWSYGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVIEPGMTSLERGQMLTEENYLDSLEEYGDEFEAKM
GAEAVLELLRAIDLEKEIGEMREELPSINSETRRKKVTKRLKLMEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKMVEREVPEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGIYYMSRERVNGKGEGMAFADVAEAEKAYRTG
VAELHARVKVRITETQIEANGERKQVRRIVDTTVGRALLSQILPAGLPFEVVNQNMGKKQ
IAKLLNICYRRLGLKDTVIFADQLMYTGYRYATISGSSVGINDMQIPQEKAKLVAEAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASCNEKVSKAMMKNLSTETVINRNGEEEEQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLIMKPLIEGGDVVEPLRERVL
GRVVAEDVYYPGTENVLAPRNTLLDEAWCKKLEDASVDEVKVRSVITCDTDFGVCAHCYG
RDLARGHIINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQTKNAGTLKL
HNAKHVVNTEGKLVIVSRSSELAIVDDLGREKERYKVPYGTILEKQEGAAIEPGQIIANW
DPHTHPIITEVEGSVQFVDMIDGVTIQRQTDELTGLSSIVVMDVAQRPSAGKDMRPAVRL
VDDKGHDLTIPGTEVPAQYFLPGHAIVSLDDNTKINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEITGTISFGKETKGKRRLVITPADGGNAYEEMIPKWRNLNVFE
GEKVERGEVIADGPESAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCIITEAGDSDLLVGEQAEVSRVKLVNRELEAEGKRPAKFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKKDDLRGLKENVIVGRLIPAGTGYAYHKNRVHTKGDVAQEA
PGITASEAEQNLADLLNLAGSQE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagtaagaccgaagagtttgaaggcatc
aagatcggcctcgcgtcgcctgacttgatccgatcctggtcgtatggcgaagtcaagaag
ccggaaaccatcaactaccgtacctttaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggccccgtcaaagattacgaatgtttgtgcggtaagtacaaacgcctgaagcat
cgcggtgttatctgtgaaaaatgtggtgttgaagttactcagaccaaagtgcgtcgtgaa
cgtatgggtcatattgagttggcttcacccgttgcgcatatctggttcctcaagtccctg
ccaagccgtattggcctgatgctggacatgaccctgcgtgacatcgaacgagtactgtat
tttgaatcttatgtagtgatcgagcctggcatgaccagcttggaacgcgggcagatgctg
accgaagaaaactacctggattcattggaagaatacggtgacgaattcgaagccaagatg
ggcgccgaagcggtactggaactgttgcgtgccatcgatcttgaaaaagagatcggtgaa
atgcgtgaagaactgccatcaattaattcagaaactcgtcgcaagaaagtgaccaaacgt
ctgaaactgatggaagccttctacacttctggcaataaaccagagtggatgatcctgaaa
gtattgcccgtgctgccaccggatctgcgtccgttggtgccattggatggtggccgtttt
gccacttccgatttgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgctggatctggctgcaccagatatcatcgtgcgcaacgaaaaacgtatgttacag
gaatctgtggatgcgctgctggataacggtcgtcgtggccgtgcgattactggttctaac
aagcgtccgctgaaatcgctggctgacatgatcaaaggtaagcaggggcgtttccgtcag
aacctgctgggtaaacgtgtggattactctggccgttcggttattaccgttggcccaacg
ctgcgtctgcaccagtgcggtctgccgaagaaaatggcattggaactgttcaagccattt
atttacggcaaactggaagcccgtggtttagccactaccatcaaagctgccaagaagatg
gttgagcgcgaagtaccggaagtatgggacgtattggatgaagtcattcgtgaacatcca
gttatgctgaaccgtgcgccaacactgcaccgtctgggtattcaggcgtttgaaccagtg
ttgattgaaggtaaagccattcgtctgcatccgctggtgtgtaccgcgtttaacgccgac
ttcgacggtgaccagatggcggtacacgtaccgctgacactggaagcccagttagaagcc
cgtgcgctgatgatgtctaccaacaacatcctgtcacctgctaacggtgaacctatcatc
gtgccatcgcaggacgtggtgttggggatttactacatgagccgcgaacgcgtgaacggt
aaaggcgaagggatggcatttgccgatgtcgctgaagctgaaaaagcttaccgtaccggc
gttgctgaactgcacgctcgtgtaaaagtacgtatcactgaaactcagattgaagcaaac
ggcgagaggaaacaggttcgccggattgtggacaccacagtaggtcgtgcgttgttgtcg
cagattctgcctgctggtttgccatttgaagtggtgaaccagaacatgggtaagaagcag
atcgctaaactgttgaacatctgttatcgccgtctgggtctgaaagacaccgttatcttc
gccgaccagctgatgtacaccggttatcgttatgcaactatttctggttcctctgtgggc
atcaatgatatgcaaatcccacaggaaaaagccaaactggttgctgaagccgaagctgaa
gtgctggaaatccaagaacagttccagtctggtctggtaactgccggtgaacgctataac
aaagtcatcgacatctgggccagctgtaacgaaaaagtatccaaggcgatgatgaagaac
ctgtctaccgaaaccgttatcaaccgtaacggtgaagaggaagaacaggcatctttcaac
agcatctatatgatggccgactccggtgcgcgtggtagtgccgcccagatccgtcagttg
gcgggtatgcgtggtctgatggctaagcctgatggctccatcatcgaaacgcccatcgta
gcgaacttccgtgaaggtttgaacgtactgcagtacttcatctccactcacggtgcgcgt
aaaggtctggcggatactgcactgaaaactgcgaactccggttatctgactcgtcgtttg
gttgacgtagctcaggacttggtagtgattgaagacgactgtggtacccacgaaggtctg
atcatgaaaccgctgattgaaggtggtgacgtggttgaaccattgcgtgaacgagtgctg
ggtcgtgtggttgccgaagatgtttactacccaggcactgaaaacgtattggcaccgcgt
aacacactgctggacgaagcctggtgtaaaaaactggaagacgccagtgttgatgaagtg
aaagtacgttctgttatcacttgtgataccgatttcggtgtgtgtgctcactgttatggc
cgtgatttggcgcgtggtcacatcatcaaccaaggtgaagctatcggtgtggttgctgcg
cagtctatcggtgaacctggtacacagctgacaatgcgtacgttccacattggtggtgcg
gcatcgagagcatcagcagaaaacaacgttcagaccaagaatgcgggtaccttgaaactg
cacaacgcgaaacacgttgtgaatactgaaggtaaactggttatcgtgtctcgttcttct
gaactggcgattgtcgatgacttgggccgtgagaaagaacgttacaaagtgccttacggt
accatcctggaaaaacaggaaggcgctgccatcgaacccggtcagatcatcgctaactgg
gatccacatactcaccctatcatcactgaagtggaaggtagcgtgcagtttgtggacatg
atcgacggtgtgactatccaacgccagactgatgaactgacaggtttgtcatccattgtg
gtgatggatgtagcacagcgtccatccgctggtaaggacatgcgtccagccgtacgcttg
gtggatgataaaggtcatgacctgaccattccgggtaccgaagtgccagcacagtacttc
ctgcctggccacgcgattgtaagcttggatgacaacactaagatcaacgtgggtgatgcg
ctggcgcgtattccacaagaatcttctaagacccgtgatattaccggtggtctgccacga
gttgctgacctgttcgaagcacgtaagcctaaagaacctgcaatcctggccgaaatcacc
ggtactatctccttcggtaaagaaaccaagggcaaacgtcgtttggtgatcacaccagcc
gatggcggtaatgcttacgaagagatgatccctaagtggcgtaacctgaacgtgtttgaa
ggtgaaaaggtggaacgtggcgaagttattgctgacggtccagaatctgctcacgacatt
ctgcgtttgcgcggcatccacaatgtggccaattacatcgtcaacgaagtgcaggatgtt
taccgtctgcaaggggtgaagatcaacgataaacatatcgaagtcatcatccgtcagatg
ctgcgtaagtgtattattacggaagcaggtgattctgatttgctggttggcgaacaggca
gaagtctctcgcgttaaactggttaaccgtgagctggaagctgaaggtaagcgccctgct
aagttcgagcgtgaactgctgggtattaccaaagcctctttggcaacagaatcctttatc
tctgctgcatcgttccaggaaactacccgtgtgctgacagaagctgctgtgggtggtaag
aaggacgatctgcgcggtttgaaggaaaacgtcattgtgggccgtctgatcccagccggt
accggttatgcttaccataagaaccgagttcacactaaaggtgacgtggctcaggaagca
cctggtatcacggccagcgaagctgaacagaacttggcagacctgttgaacctagcaggc
agtcaggaataa
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integrated database retrieval system
