Stegodyphus dumicola: 118189518
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Entry
118189518 CDS
T07385
Name
(RefSeq) uncharacterized protein LOC118189518 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118189518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdm03021
]
118189518
03019 Messenger RNA biogenesis [BR:
sdm03019
]
118189518
Transcription machinery [BR:
sdm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118189518
Messenger RNA biogenesis [BR:
sdm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118189518
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
DUF4254
Motif
Other DBs
NCBI-GeneID:
118189518
NCBI-ProteinID:
XP_035216032
LinkDB
All DBs
Position
Unknown
AA seq
2010 aa
AA seq
DB search
MAQTVAEEYKSSLSDLNFNSKPHINMLTMLAEENIRHASVIADTIVHHINTVTPELKLPG
LYLVDSIIKNIGGQYLKLFSQHLISLFSSVFEKVDEGTRSLMFKLRQTWNNILPNKTLYG
LDVQIRKLDPAWPVTAKPVIKPVQGIHINPRFLGGTTSVENPAMTALKKEEESTSNVFKK
EETLQPAVPKKEEKETKHQQDEALKKMSANKEKPSILEKKLELATKKKTDLVTAMGSLLQ
NFKQGTVKDLPLVKIDKVTHQSLPCKTNILKSDASKTMFSSGTIQPSTAVPVSKAECSKG
ISGNIQLSTAIPVSKAEGYKASSGTIQPFSAVPISKAESSAVHNLASKSGVQKMTGVKVV
RKKMNPSLVDKVPDRKKSENINPVKHKTSNAYNKNKTAEETKKISSNNKSTEEIKKVSNN
SKNTEETKKVSSNCKFKSPQECKNNFGDNKCKVEEDSRKIAYESKCLNTNRIDNPSAKFS
KAIKDEYKIPKCSPEKKLLNSDKKQLPPISAISKTVPQVHEGLQPKFVKKSTKAKRHSDS
LFEKEEVYKKSRNNEESIIKLEKPSVLHKASDFSKQSFDQSSENAENLTPKDEDLRLYYP
QFQKRSSRGKVMKRMNKICDSKDVCDDQSATPAKKLKSSSNIKSECEMQDEPVLFGTKDQ
DQRRLPIDFGDSNAKGWAQYKAAHPDEYKSPGSVRDSLEERLKQRRFSSSESGDGFFSPM
RPRLQRGRNSSGFGSRRGHFVRSRERFPSSHVGSVMLDPQIILQQAEDKYRNGVISKYEY
LDLCHHLQKVLECSQQNLYSDLISQTQNLNSSKMKNHEFSNPQKLRANLEHEINFQPQTM
KFKNTLPLPSAVKPFKLDNKMRLVHFVNNKALVVLDNNEPRELTFEGEPREVYVEGLAEP
IILGFDGKPVEFEVNGKRHSMKFGTPAREIYINDYPYEAKFGGPPFEARLDDGQIYNIRL
SGPPPQVVVGDKPEYELFAKTQGGNNPLHKKSEFSDSKMETKYQFSESSTGSVLQDVDMR
IKPENMKMLQDNIPSDNDMKDVDWRKIPPLNEAANTMSQPKIWSDHASGNYENWNEDKTD
LSDVKRNLNKREIGQVSVDHLDRQQMEFDDVSSVHGWKEPPSYSDVKLSENLHNTKPHHK
WENNQPYEQSDKVNWAHKDYRDSRFLGNHHPKADDTDHLEHVSSVQHTEHNCSSDIQHTE
HSSAHHPIDSSSTPYHEHAPAVHHLEHSSTAFQAKRGSDSHHSKHGGFVHTECVPPVYHS
ENKPLYRHEPSTYHPEREPPVLHSKGEHPSHHERVPPLYHPEPRLAVDHSECSSVKHHVE
HGHTIHHSECGALLPHLEPGSGIHHSEHSITRHNLEHSSTMHQSEHGPALHYMQHHPAHH
HPEQAPAIHHAKHAVATHPLEQVPAMHNSEYVPTMSHTQGPAAHCLEQEAAMHHLENNPP
IHQPEQGPPIHHPEQGPPIHHPEHGSIHISQGNNPEHLESNLYDYDSRHIHQRMSCPPRP
PFFNHRVRLRLRGVRYGAWIHPNFRERSHDLFIGSSRRPLLRDPQPHRYIRPPCPLLPLP
RFHAPDSVSRGALLPLPNITKNVPMEFPSEPNIASTSSLPSISTEGDVNFASGECDLPVD
VESLLEKLVAAGIITSKPYEESSNEPKSIAESETKEEKENDVAEEESVPDIELKSESLRV
YYPSVIALLYKGSQCCTCGLRFKELQSDQYSRHLDWHFRMNRREKEGAKNAFARRWFYEV
EDWIQFEEFEDFEERVPSYFELQADEPQMEAAVTPVVPSVPAAENITETCQVCGETFDLF
WVEDEEEWHLRDAVRHDEQVYHPACYEDFKKASEAEKQELEISVDENLEKEILELLNCMF
CKVSDSYVKEESESETHLLETNDFAEKPSHGEKPEIDDDILEGKPGEEEIIGLISEPDME
IETDLPKSEPEMIVMRSGGITLKVKAESLKSSSTRPSSSTKDTTSRDNISESEDGDDDDD
DFRPPTPDPKFHVMPRVRKGRELSGLCCIQ
NT seq
6033 nt
NT seq
+upstream
nt +downstream
nt
atggcacagactgttgctgaagagtacaaatcatctttaagtgatctaaactttaatagc
aaacctcacataaatatgttgacgatgttagctgaagaaaatattcggcacgcttcagta
attgcagatactattgtacatcatataaatacggtgacgccagaattgaagttaccaggc
ctttatcttgtggattctatcataaaaaatattggagggcagtatctgaaattatttagc
caacatttgattagtcttttttcatctgtatttgaaaaggttgatgaagggacaagaagc
ctgatgtttaaattacgtcaaacttggaataatattttgcccaacaaaactctgtatggc
ttagatgttcaaatccggaaactggatccagcatggccagttactgcaaaaccagtaatt
aaacctgttcaaggtattcatattaatccaagatttctgggtggaactacatctgtggaa
aatcctgccatgactgctctgaaaaaagaagaagaatcaacatcaaatgtatttaagaaa
gaagaaactctgcagcctgcagtgcctaagaaagaagagaaggaaacaaaacatcaacag
gatgaggcattaaagaagatgtcagcaaataaggagaaaccaagtattttggaaaagaaa
ctagaattggctactaagaaaaaaactgatctagttacagcaatggggtctttgttacaa
aatttcaagcaaggtactgttaaagatctacctttggttaaaatagacaaagtaactcac
cagtctcttccttgcaagactaatattttgaaatctgatgcaagtaagacaatgttcagt
tctggaaccattcaaccttctactgctgttccagtttctaaagcagagtgttctaaaggg
atttctggaaacattcaactttccactgccataccagtttctaaagcagagggttataaa
gcaagttctggaaccattcagccattttctgctgttccaatttctaaagcagaatcttct
gcagtacacaacttagccagtaaaagtggtgttcaaaagatgactggagtaaaagttgtg
agaaagaaaatgaatccaagcttagtagataaagttccagataggaaaaaaagtgagaat
attaaccctgttaaacataaaacaagtaatgcctataataaaaataaaactgcagaggag
actaagaaaatttcaagtaacaataaaagtactgaggagattaaaaaagtgtctaataac
agcaaaaatacagaagagactaagaaagtttctagtaactgtaagtttaaaagtccacaa
gagtgtaaaaataattttggggacaataaatgcaaagttgaagaggattctaggaaaata
gcttatgaaagcaagtgtctaaatactaatagaattgataatccttcagctaaattttcc
aaagctattaaagatgagtacaaaattccaaagtgttcacccgaaaaaaagttattgaat
tctgataaaaaacagttacctccaatttcggctatttctaaaactgtgcctcaggtacat
gaaggtttacagccgaaatttgttaaaaagtctacaaaagcaaaacgtcattctgattca
ttatttgagaaagaggaagtatataaaaaaagcagaaataatgaagaatccatcataaaa
ctagaaaaaccatcagttctgcataaagcatctgattttagcaaacagtcttttgatcag
tcatcagaaaatgcagaaaaccttacacctaaagatgaagacttgcgtttgtattatcca
caatttcagaagagaagttcaagaggtaaggttatgaagagaatgaataaaatttgtgat
agtaaagatgtgtgcgatgatcagagtgctactcctgcaaaaaaattgaaatcttcaagt
aatataaagtctgaatgcgagatgcaagatgagcctgttttgtttggtacaaaagatcaa
gatcagagacggctgcctatagattttggagattctaatgccaaaggttgggcacagtat
aaagctgcccatcctgatgaatataaaagtccaggatctgttagagatagcctggaagaa
agattaaaacagagaaggttttcatcctctgaatctggtgatggttttttctctcctatg
cgccctcgtttacaaagaggaagaaattcttcaggatttggaagtcgtcggggtcatttt
gtaagaagtcgagaaagattcccttcatcacatgttggttctgtaatgcttgatcctcaa
attatacttcaacaagctgaagataaatatcgtaatggagtgatctcaaaatacgaatat
ttagatttatgtcatcatttgcaaaaagtattggaatgcagtcagcagaatctgtattca
gatttaatttcccaaacgcagaatttgaacagcagtaagatgaaaaatcatgaattctca
aatccacagaagctgagagcaaatttagaacatgaaataaattttcaacctcagactatg
aaatttaaaaatactctgccattgccatctgctgttaaaccttttaaacttgacaataaa
atgaggttggttcactttgtgaataataaagcacttgttgtattggataataacgaacca
agagaattgacatttgaaggtgaacccagagaagtctatgttgaaggattggcagagcca
ataatcctgggatttgatggaaaaccagttgagtttgaagtaaatggaaaacggcatagt
atgaagtttggtactccagctagagaaatatacattaatgattatccttatgaagcaaaa
tttggcggtccaccgtttgaagctaggctggatgatggccagatttataacattcgtctc
agcggcccaccacctcaggttgttgttggtgataaaccagagtatgaattatttgcaaaa
actcaaggtggaaacaaccctttgcataagaaatctgaattttcggattctaaaatggaa
accaaatatcagttttcagaatcttcaactggttcagtacttcaagatgttgatatgcgt
attaagccagaaaatatgaaaatgttacaggacaatatacctagtgataatgatatgaag
gatgttgattggaggaaaattccccctttaaatgaagcagctaatacaatgagtcagcca
aaaatatggagtgatcatgccagtggtaattatgaaaactggaatgaagataaaacagat
ttatctgatgttaagagaaacttaaacaagagagaaattggacaggtttcagttgaccac
ctagatagacagcaaatggaatttgatgatgtgtcttcagttcatggatggaaagagcct
ccttcttactctgatgtaaaattaagtgaaaatctacacaatacaaaacctcatcataag
tgggaaaacaaccagccctatgagcaatcagataaagtaaactgggcacacaaggattat
agagactccagatttcttggtaatcaccatccaaaggctgatgatactgatcatcttgaa
catgtttcttccgttcagcatactgaacataactgcagttctgatattcagcatactgaa
cacagttcagctcatcatcctatagatagctcatctacaccctatcatgagcatgctcct
gctgtacatcatcttgaacatagctctactgcctttcaggccaaacgtggttctgattct
catcattctaaacatggcggctttgttcataccgaatgtgtacctcctgtttatcattct
gaaaacaaacctctttatcgtcatgaaccttccacatatcatcctgaacgtgagcctcct
gttcttcattctaaaggtgaacatcctagtcatcatgaacgagtgcctcctctttatcat
cctgaaccaaggcttgctgtggatcattcagaatgcagttctgtcaagcatcatgtagaa
catgggcatactatccatcattcagaatgtggcgctctgttgcctcatctagaacctggc
tctggcattcatcattcagaacatagcattaccaggcataacttggaacatagttctaca
atgcaccaatcagaacatgggcctgccttgcattatatgcaacaccaccctgctcatcat
catccagagcaagcgcctgctatacaccatgcaaaacatgctgttgctacacatcctctg
gaacaggtccctgctatgcataattcagaatatgtacctaccatgtcgcatacacaaggt
cctgctgcgcattgtctggagcaagaggctgccatgcatcatctagaaaataatcctccc
attcatcaacccgaacaaggtcctcctattcaccaccctgaacaaggccctcctattcac
caccctgaacatggttctatacatattagccaaggcaataatcctgaacatcttgaaagc
aatttatatgattatgattctagacatattcatcagcgtatgtcatgtcctccaaggcct
ccattctttaatcatcgagtaagattacgtctgcgcggtgttagatatggtgcatggatt
catccaaactttagagaaaggagtcatgatttgttcattggatcaagtcggagaccattg
ctgagagatcctcaaccgcacagatatattagaccaccatgtccattgttacctctgcca
agatttcatgctccagattctgtttccagaggggctcttttacctttgccaaatataaca
aaaaatgtgccaatggagtttccaagtgagccaaatattgcatctacaagtagtttacca
tcaatttctactgaaggtgatgttaattttgcatcaggtgaatgtgatttgccagttgat
gttgaatcccttctagaaaagctagttgctgctggaataataacttcgaaaccatatgaa
gaatcttctaatgaacctaaaagtattgctgagtcagaaacaaaggaagagaaagaaaat
gatgttgcagaagaggaatcagttcctgatattgaattgaagtctgaaagtctgagagtg
tattatcccagtgttatagccttactatacaaaggatcacagtgctgtacttgtggtttg
aggttcaaagaacttcagagtgaccagtatagtcgccatttagactggcatttccgaatg
aatagaagagaaaaagagggcgctaagaatgcttttgcaagacgatggttttatgaggtg
gaagactggattcaatttgaagaatttgaagattttgaagaaagagttccaagttatttt
gagcttcaagccgatgaacctcaaatggaagctgcagttacaccggttgtacctagtgtc
cctgccgcagaaaatataacagaaacatgccaagtctgtggcgaaacgtttgatcttttt
tgggttgaagatgaagaggaatggcatttgcgtgatgcagtacgacatgatgagcaggtt
tatcacccagcttgttatgaagattttaagaaggcatctgaagcagagaaacaggaatta
gaaatatcagttgatgaaaaccttgaaaaagaaatacttgaacttttgaactgtatgttt
tgtaaagttagtgattcttatgttaaagaagagagtgaaagtgaaacacatttgttggaa
acaaatgattttgctgaaaaaccttctcatggagagaaaccagaaatagatgatgatatt
ttagaaggaaagccaggtgaagaagagataattggattaatctctgaaccagatatggag
attgaaacagatcttccaaagtcagaacctgaaatgattgttatgcgctcaggaggaatt
accttaaaagtgaaagctgaaagtctgaaatcatcttcaacacgtccatctagttcaaca
aaagatacaacatctagagacaatatttcagaaagtgaagatggtgatgatgatgatgat
gatttccgtccacctacaccagatcctaaatttcatgtaatgcctcgggttagaaagggg
agagagttatcaggtttgtgttgtatacagtaa
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integrated database retrieval system
