Shewanella denitrificans: Sden_1674
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Entry
Sden_1674 CDS
T00344
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sden_1674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_1674
Enzymes [BR:
sdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sden_1674
DNA repair and recombination proteins [BR:
sdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sden_1674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABE54958
UniProt:
Q12NL8
LinkDB
All DBs
Position
complement(1945274..1948813)
Genome browser
AA seq
1179 aa
AA seq
DB search
MSQFSVFTPPSVKKGQQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETE
LHYLLANHDVNLCLFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTLMV
RLPPQSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPTG
CQQPLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATDSAAIEGFRQRYRRRF
EVISKEAESVYQLVSRNLMPAGIENYLPLFFDDTASLFDYLPENTQLITLGDIDKACANH
LTEIHHRYEDRRVDPLRPLLAPHELYLTQEQLFAAFKPYKRSQFFIHTPGDAQLGEDGTK
KDVAKKDSALQANVAPLPDINANHKLKQPLESLQAFAQDGKPLLFSAESEGRREALLALL
SKIGIKPTLFKHLDEFLDASVPLKGPVHGLIVSPLSRGCTLLDSPKGELSLICETELFGH
KIAQQRRRDKQKQVSSDALIKDLAELKVGQAIVHLEHGVALYQGLETLDTGGLVAEYLKL
EYAGGDKLYVPVSSLHLISRYNANSEDNAQLNKLGNETWAKAKKKAIEKIRDVAAELLDV
YARRQSRPGEALAIDADEYAQFAQGFPYEETVDQESAIIAVLNDMQAPTSMDRLVCGDVG
FGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVEIEVMSRFRSAKE
QEQVLQSLSEGKVDIVIGTHKLLQSEAKFVDLGLLIIDEEHRFGVRQKEKIKALRANVDI
LTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYHQATIREALLREILRGGQ
VYYLHNNVETIEKCAQDLRDLLPEARVVTGHGQMRERDLEKVMADFYHQRFNVLVCTTII
ETGIDVPSANTIVIDRADKFGLAQLHQLRGRVGRSHHQAYAYMITPPIKLISTDARKRLE
AIDALEELGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVSALKEGKE
PSLAYMLNAQCEVDLRIPALLPEDYVSDVNMRLSMYKRIANCKSEAMLDELRVEFIDRFG
LLPEPTKNLLELSLYKHQATKLGATKIEMHAKGGSIEFGDNHKIDPMFIIGLLQKQPNIY
RMEGPNKLRFAIPAESSKQRLELVATLLEQLAQHSIGEK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaatttagtgtattcactccgcctagtgttaaaaaaggccaacaaacccaacgt
cttgtaaccttaggtgggctttcccaatccctgagcttagcgcaacttattctcgccaat
aagggcactagtcttatcgtcacccacgatacccctacggccatgctgctggaaacggaa
ttgcattatctacttgcaaatcatgatgtgaatctgtgtttattcccagacagagaaacc
ttgccctacgacagtttctcgccccatcaagacttgatttcccagcgccttgaaacctta
gcgcaactaggtaacttaggtcacaacgccgttatcgtgccgattaataccttaatggtg
cgtttacccccacaatcctatttaagtgccaatgtcatggtgctcaaaaaaggcgatacc
tacgccctgcaaacggtaagacagcacttagtggatacgggttatcacttagttgaacag
gtctatgaacatggggagtttgccattcgtggctcgattttagatatcttccctactgga
tgtcagcagccactgcgtattgaattatttgacgatgaaatcgaatccattcgccatttt
gatgtagaaactcagcgatctgaggtcgccgtcgatgccatacgcatgttacccgctaaa
gaatttgccaccgacagcgccgccatcgaaggctttaggcaaagataccgtcgccgtttt
gaagtgatttcaaaagaagctgaatccgtttatcagttggttagccgtaacctgatgcct
gctggcattgaaaattatctgccactattttttgatgacacggcatcactatttgattat
ctgcctgaaaacactcagttgatcaccttaggtgacatagataaagcctgtgctaatcat
ttaactgaaatccatcataggtatgaagacaggcgcgtcgatccattaaggccactactt
gcgccccatgagttgtacctgacccaagagcaactcttcgccgcattcaaaccctataaa
cgtagccagttttttattcacaccccaggcgatgcccaattaggtgaagatggcactaaa
aaagacgttgctaaaaaagacagtgccttacaggccaacgttgctcctctgcctgatatc
aatgccaatcataaactcaagcagcccctagaaagcctgcaggcctttgctcaagacggc
aagccattgttatttagcgcagaatctgagggacgccgcgaagccctgttggcattgctg
tcaaaaattggcatcaagccgacactctttaagcatctggatgaatttttagacgcaagc
gttccccttaaggggcctgtgcatggcttgatagtctctcccctttctcgtggctgtacc
ttgttagactcccccaagggagagttaagcctaatttgtgaaaccgagctattcggccat
aaaattgctcagcagcgccgccgcgataaacaaaaacaagtcagcagtgatgcactcatt
aaagacttggccgaacttaaagtcggccaggccatagtgcatttagagcacggcgtcgcc
ctctatcaaggacttgaaaccttagacactggcgggctggtggccgagtacttaaaactt
gagtatgccggtggcgataaactgtatgtccctgtgtcatccttgcatttaatcagtcgc
tataacgccaattccgaagacaatgcccagcttaataagctcggcaatgaaacttgggct
aaggccaagaaaaaagccatagaaaaaattcgtgatgtggccgctgaactcttggatgtg
tacgccagacgccagtcacgtccaggtgaagccctagcgatagatgccgatgaatacgcg
caatttgcccaaggtttcccctatgaggaaacggtcgatcaagaatcggccatcatagcc
gtattgaatgatatgcaggcgccaacctctatggaccgcctcgtctgtggtgatgtgggc
tttggtaagacagaagtcgccatgcgcgccgcctttgtggcggttaatgccggtaaacaa
gtcgtggtactcgtccccaccaccttgcttgcccagcagcattatgaaaactttaaagac
aggtttgccgactggccggtagaaatcgaagtgatgtcacgttttcgcagcgctaaagag
caagagcaagtgttgcaatccttaagtgaaggcaaggtggatatcgtcattggtacccat
aagctactgcaatctgaggcgaaatttgttgatttaggtttattgatcatagatgaagaa
cacagattcggagtgcggcaaaaagagaaaatcaaagcactcagggccaatgtcgatatc
ttaaccttaactgcgaccccaattccgcgcacactcaacatggccatgtccgggatgcgc
gacttatccattatcgccaccccgccggcgaaacgcttggcggttaaaaccttcgtgcgt
gaataccatcaggcgaccatcagggaagcattgctgcgtgaaatccttcgcggcggacaa
gtgtattacctgcacaataatgttgaaaccatagaaaaatgcgctcaagatctacgggac
ttgttgccagaggctcgagtggttaccggccatgggcagatgcgtgaacgggaccttgaa
aaagtcatggcggatttttatcatcaaagattcaacgtgcttgtctgtactaccattatt
gaaacaggtatcgacgtgccaagcgccaacactatcgtgattgatagggccgataagttt
ggtctggcgcagctgcatcagctgcgtggccgtgtaggccgctcacatcatcaagcctat
gcctatatgataaccccgcccattaagctgatttctaccgatgcgcgcaaacgtctcgaa
gccatcgatgccttagaggaattgggcgcaggctttatgctggccacccaagatcttgaa
attcgcggcgccggtgaattattaggcgatgagcaaagcggtcacatctcaaaaattggc
ttcagcctctatatggagatgctcgaatcggcggtcagtgccttaaaagaaggcaaggag
ccgtcattggcttatatgctcaatgcccagtgtgaggtggatttacgcatccccgcctta
ctacctgaagattatgttagcgatgtcaatatgcgcctttccatgtataagcgcattgct
aactgtaagagtgaggccatgctcgacgagctcagagtggaatttatcgaccgcttcggc
ttactgcctgagcccacgaaaaacttactggaattgagcctatataagcatcaagccact
aaacttggcgccactaagattgaaatgcatgccaaaggcggcagcatagaatttggtgac
aatcacaaaatcgaccccatgttcatcataggtttattgcagaaacagccaaatatctat
cgaatggaaggaccaaataagctaagattcgccattccagcagaaagtagcaaacaacgc
ctcgaacttgtggccaccttgctcgaacaactcgctcaacacagcattggagagaaatag
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