Shewanella denitrificans: Sden_3026
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Entry
Sden_3026 CDS
T00344
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sden_3026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdn03019
]
Sden_3026
Enzymes [BR:
sdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sden_3026
Messenger RNA biogenesis [BR:
sdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sden_3026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABE56304
UniProt:
Q12JS2
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All DBs
Position
3633814..3635304
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AA seq
496 aa
AA seq
DB search
MSFSSLGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL
EILSKGKPAQRGQVRALVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIAAL
KQGVDILVATPGRLLDLCNQRALSFSTLEILVLDEADRMLDMGFIRDIRKVLAMLPKQRQ
NLMFSATFSDDIRELAKGLVNNPVEISVTPRNATANTVTQWVTPVGQSDKTSVLIDLIKD
NNWQQVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVMVAT
DIAARGIDIDQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLVADEEVKLLHDIER
LIGRVIDRKAIPGHEPRHSLPEPNLKGRTASNHGHGARSSQAKSQPQHKQPNPNRPKHAQ
HANDRKANDRVAQSIGLEEKPAKRPRRAPKPAGEAALGANTPSRPTRSPRRSASNEGQAA
NANPSKGATNPWGNRD
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctccctaggcctcagtgccgccctgctaaaagccatcgctaaacaaggc
tatgacacaccaacagccattcaggcccaagctattccagctgtattggaaggcaaagac
gtcatggctgcggcccaaacagggacagggaaaaccgctggttttacattaccattatta
gaaattttgtctaaaggcaaacctgcacaacgtggccaagtgcgtgccttagtgctcacc
ccaactcgtgaactggcagctcaagtggccgacagtgttgagacttatggtcacaactta
ccgcttaaatctgcggtcgtgtttggcggcgtgtccatagtgccgcaaattgcggcgtta
aagcagggcgtggatattttggtggcaaccccaggtcgactactggatttgtgcaaccag
agggcgctcagttttagcaccttagaaattctagtgttagatgaagccgaccgcatgctg
gacatgggcttcattcgtgatatccgtaaagtattagccatgctgccaaagcagcgtcag
aacctgatgttctcggccaccttcagcgatgacattcgcgagcttgccaaagggttagtg
aacaatccggttgagatttcagttacgccgcgcaacgccaccgccaacactgtgactcag
tgggtcaccccagtgggccagagcgacaagacctctgtgcttatcgatttgattaaagac
aataattggcagcaagtgttagtgttttctcgcactaagcacggcgccaaccgtattgcc
aaaaaccttgaagccgccagcatcaaagccgcggccattcatggcaataaaagccaaggc
gcgcgcactaaagcccttgcggattttaaagccggtaaagtgcaagtcatggtggccaca
gatatcgccgcccgcggtatcgatatcgaccaattaccatttgtggttaacttcgattta
cctaacgtgtcagaagattatgtgcatcgtattggccgtaccggccgcgctggagccagt
ggacaagccgtgtcgttagtggccgatgaagaagtcaaattactgcacgacatcgagcgc
ttgattggccgagtcatcgacagaaaagccattccagggcacgagccaagacacagcttg
cccgagccaaaccttaagggccgcactgcatcgaatcacggccatggcgcacgcagcagt
caagccaagagccagccacagcacaagcagccgaaccctaatcgccctaagcatgcccag
catgccaatgaccgtaaggccaacgacagagtcgcccaaagcataggcttagaagagaag
cctgcaaagcgtccacgccgcgccccaaaaccagctggtgaagcggcacttggcgcaaac
acgccttcacgccctactcgtagcccaagacgctcagcctcaaatgaaggccaggcggct
aacgccaatccaagcaaaggcgctacaaacccttggggcaacagagactaa
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