Sphingomonas donggukensis: M9980_12545
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Entry
M9980_12545 CDS
T08944
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
sdon
Sphingomonas donggukensis
Pathway
sdon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
M9980_12545 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdon03400
]
M9980_12545 (xseA)
Enzymes [BR:
sdon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
M9980_12545 (xseA)
DNA repair and recombination proteins [BR:
sdon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
M9980_12545 (xseA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
URW75353
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All DBs
Position
2547348..2548727
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AA seq
459 aa
AA seq
DB search
MADPFADDFTASRLVAEPAPGSNAPDMSVTELSAKLKRVVEGEFGHVRIRGEISGWKRAA
SGHAYLALKDDGAVIDAVIWRGSASALQFAPADGVEVIATGKLTTYPGRSKYQIVIDRME
LAGEGALMALLEKLKAKLAGEGLFDRERKKDIPYLPRVIGVVTSPTGAVIRDILHRLEDR
CPCHVLVWPVKVQGAGAAAEIAAAVRGFDAIVPGGPVPRPDLVIVARGGGSIEDLWAFNE
EAVVRAVADCTIPIISAVGHETDTSLCDFAADVRAPTPTAAAEFAVPVKAELQSNIAALS
LRTERCARRYHERGAERLAALVRVLPRRDAILGPQRQRADDLTARLGLALERRLAAGRRD
LDRAGGALRPAILDARLAAARTRLGDLGRLLESVDPDKPLDRGYARVEARATGRVVASAA
DARAAGALTITFRDGAVPARLERGTGKAYAEPPEQPSLL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggccgacccttttgcagacgatttcacggcgagccggctggtagccgagccggcgccg
ggcagcaacgcacccgatatgtcggtgaccgagctgtcggcgaaattgaagcgcgtggtc
gagggcgaattcggccacgtccgcatccgcggcgagatttcggggtggaagcgtgcggcc
tcgggccatgcctatctggcgctgaaggacgacggcgcggtgatcgacgcggtcatctgg
cgcggctccgcctccgcgctgcaattcgcccccgccgacggggtcgaggtgatcgcgacc
ggcaagctgacgacctatccggggcggtcgaaataccagatcgtgatcgaccggatggag
ctggccggcgaaggcgcgctgatggcgctgctcgaaaagctgaaggcgaagcttgccggt
gaggggctgttcgaccgcgagcgcaagaaggacattccctatttgccgcgcgtcatcggc
gtcgtcacctcgccgaccggcgcggtcatccgcgacatcctccaccgcttggaggatcgc
tgcccctgtcacgtgcttgtctggccggtgaaggtgcagggtgcgggcgcggcggcggag
atcgcggcggcggtgcgcgggttcgatgcgatcgttcccggcgggccggtgccccggccc
gatctggtcatcgtcgcccgcggcggcggctcgatcgaggatctgtgggccttcaacgag
gaggccgtcgtccgcgcggtcgcggactgcaccatcccgatcatctcggcggtggggcac
gaaaccgacaccagcctgtgcgacttcgccgccgatgtacgcgcgccgacgcccaccgca
gccgcggaattcgcggtaccggtgaaggccgagctgcagtcgaatatcgccgcactgtcg
ctgcgaaccgaacgctgcgcgcggcgctatcacgaacgcggggcggagcggctggcggcg
ctggtgcgggtgctgccgcggcgcgatgcgatcctggggccgcagcgccagcgcgccgac
gatctgactgcgcgcctcggcctcgcgctcgaacggcggctggcggcggggcggcgtgat
ctcgaccgcgcgggcggggcgctgcgcccggcgattctcgacgcgcggctggccgcggct
cgcacacggctgggcgatctcgggcggctgctggaaagcgtcgatcccgacaagccgctc
gaccggggctatgcgcgcgtcgaggcgcgggcgacgggccgcgtcgtcgccagcgccgcg
gacgcgcgtgcggcaggcgcgctgactatcaccttccgcgacggcgcggtgcccgcccgg
cttgagcgcgggaccggcaaggcttatgcggagccgcccgagcagccgagcctgctgtaa
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