Sphingomonas donggukensis: M9980_12800
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Entry
M9980_12800 CDS
T08944
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sdon
Sphingomonas donggukensis
Pathway
sdon03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M9980_12800 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdon03400
]
M9980_12800 (ligD)
Enzymes [BR:
sdon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M9980_12800 (ligD)
DNA repair and recombination proteins [BR:
sdon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M9980_12800 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
URW75400
LinkDB
All DBs
Position
complement(2607271..2609742)
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AA seq
823 aa
AA seq
DB search
MAKADPLATYNAKRDFAKTREPKGARGTAAGHSFMVQKHDATRLHWDLRLEMDGVLKSWA
VTRGPSLDPQDKRLAVRTEDHPMSYATFEGTIPKGEYGGGTVMLWDRGTWEAVGGKDPAK
MIREGHVHVILHGERMQGEWLLVRMKPRAGESRDNWLLKKVDDAHAGASGGLVDTALTSV
ASGRTMAEIAGGGDAVRHSDAKKAKGAPAPRAKRAAKPARGTLPKFRDVQLATLVDAVPA
GSGWLHEVKYDGYRATIAVGGGKVRAYTRTGLDWTERFGPVVAAIAELRLPACLIDGEVV
ALDAEGRPSFSALQAALKDGRDLQYFAFDLLSQGGDDLTALPNVERKARLQALLAGAAPP
IHYAEHIVANGEGLFDQLCREGYEGIISKRADVPYRGTRSRSWLKTKCTRRQEFVIVGFV
ESDKKGRDLRSLVVGVNDGGRLRYAGRVGTGFDADTRDMLMAKLKPIARKAAPVDYVPRA
SARGVTWVKPVLVAEVAFAEFTADNVIRHASFLGLREDKPAGEVVPERAAKPVDEKPFGV
TISHPERVVFPASGTTKGELATYYAQVAEPMLTWLGNRPVSLVRCPQGRGKHCFFQKHDG
GNFGGKVGSVAIREKDGGSEDYLVVDSGEAIVTCVQMGTIEFHGWGAPADDVEHPDRMVF
DLDPDEGLGFDAVRKAAVQLKDLLGELGLVSFAMASGGKGVHVVVPLDQSRDWVAVKDFA
DRFSRAVAQAHPDRFTANMRKSERKGRIFLDWLRNQRGSTAVLPYSVRAREAATVAVPIT
WEELDTLETAHPYTVADVAVLFERAAGRELAGWGVADQALPDL
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagccgatccgctcgcgacgtacaacgccaagcgcgatttcgcgaagacgcgc
gagccgaagggcgcgcgggggactgcagctggccacagcttcatggtccagaagcatgac
gcgacccggttgcactgggatttgcggctggagatggatggggtgctgaagagctgggcg
gtgacgcggggcccgagccttgacccacaggacaagcggctggcggtgcggaccgaggat
cacccgatgtcatatgcgacgttcgaggggacgatccccaagggcgaatatggcggcggc
acagtgatgttgtgggatcgcggcacgtgggaagccgtcggcggcaaggatccggcgaag
atgattcgtgaggggcacgtccacgtcatcctgcacggtgagcggatgcagggcgaatgg
ctgctggtacggatgaagccgcgcgccggtgaaagccgagacaactggctgctgaagaaa
gtcgatgatgcccatgccggcgcgtcgggcgggctggtcgataccgcactgaccagcgtg
gcgagcgggcggacgatggccgagatcgctggtggtggcgacgcggtgcggcattcggat
gcgaagaaggcgaagggcgcgcccgcgcccagggcgaaacgcgccgcaaagccggcacgc
ggcacgctgccgaagtttcgcgacgttcagcttgcgacgttggtcgatgcggtgccggcg
gggtcgggttggctgcatgaggtgaaatacgacggctaccgcgcgacgatcgcggtgggc
gggggcaaggtgcgggcgtacacgcgcaccggactcgactggacggaacggttcgggccg
gtggtagcggcgatcgccgagcttagactgccggcgtgcctgatcgatggcgaggtggtg
gcgctggatgcggagggacgcccgagcttttcggcgttgcaggcggcgttgaaggacggt
cgcgacctccagtattttgccttcgacctgctgagccaaggcggcgacgacctgactgcg
ctgcccaatgtcgagcgcaaggcgcggttgcaggcgctgctcgccggggccgcgccgccc
attcactatgccgagcatatcgtcgcgaacggcgaggggctgttcgatcaactctgccgc
gagggatatgaggggatcatatcgaaacgcgccgacgtgccctatcgcggcacgcgcagc
cgcagctggctgaagaccaaatgcacgcggcggcaggaattcgtgatcgtcggatttgtc
gagagcgacaagaagggtcgcgacctgcgctctctggtggtcggcgtgaatgatggcggg
cggctgcgctatgcggggcgggtcggaacgggcttcgatgccgacacccgcgacatgctg
atggcgaagctgaagccgatcgcgcgcaaagccgcgccggtcgattatgtgccgcgggct
tcggcgcgcggggtgacttgggtgaagccggtgctggtggcggaggtcgcctttgccgag
ttcaccgcggacaatgtcatccggcacgcaagtttcctggggctgcgtgaggacaagccg
gcgggcgaggtcgtgcccgagcgcgcggcgaaaccggtcgatgagaagccgttcggggtc
acgatcagccatcccgagcgcgtcgtgtttcccgcgtcgggcacgaccaagggcgaactt
gcgacctattatgcgcaggtcgccgagccgatgctgacgtggctcggcaaccgcccggtc
agcctggtccggtgcccgcaggggcgcggcaagcactgtttcttccagaagcacgacggc
ggcaatttcggcggcaaggtggggtcggtcgcgatccgcgaaaaggacggcgggagcgag
gattatctggtcgtcgacagcggcgaggcgatcgtgacgtgcgtgcagatggggacgatc
gaattccacggctggggtgcgccggccgacgatgttgagcatcccgaccgcatggtgttc
gacctcgatcccgacgaggggctggggttcgacgcggtgcgcaaggcggcggtgcagttg
aaggacttgctcggcgagctggggctcgtcagcttcgcgatggcgtctgggggcaagggc
gttcacgtcgtcgtgccgctcgatcaatcgcgcgactgggtggcggtgaaggacttcgcc
gaccgcttctcacgcgcggtggcgcaggcgcatcccgatcgcttcaccgccaacatgcgc
aagagcgagcgcaaggggcgcatcttcctcgactggctgcgcaaccagcgtggatcgacc
gcggtgctgccctattcggtgcgcgcgcgggaagcggcgacggtggcggtgccgatcact
tgggaggaactggatacgctggagacggcgcatccgtacacggtggcggacgtcgcggtt
ctgtttgagcgcgcggcgggcagggagctggccgggtggggtgtcgccgatcaggcgcta
cccgatctttga
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