Streptomyces drozdowiczii: NEH16_19065
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Entry
NEH16_19065 CDS
T09042
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdrz
Streptomyces drozdowiczii
Pathway
sdrz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NEH16_19065 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdrz03400
]
NEH16_19065 (mfd)
Enzymes [BR:
sdrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NEH16_19065 (mfd)
DNA repair and recombination proteins [BR:
sdrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NEH16_19065 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UZK55932
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All DBs
Position
4175866..4179396
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AA seq
1176 aa
AA seq
DB search
MSLNGLLDVVVRDPALDEAVKAAGDGHRMHIDLVGPPAARPFAVAALARDAGRTVLAVTA
TGREAEDLAAALRTMLPPDTIAEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSADDP
ETGPVSVVVAPIRSVLQPQVKGLADLEPVALRTGQSADLGETVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKIADQRSLEVAEHGLWAPPCRELL
LTDEVRERAAALAEAHPELGELLHKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAASAGGGEAPIDVGAASLRGIADVRERARELDMM
WWSISPFAADAELDDDTLPLGMQAPEMYRGDTARAFADTKGRLADGWRTVYVTEGQGLAS
RTVEMLGGEGIAARLDPDLDEISPSVVHVSCGAIDHGFVHPGLKLAVLTETDLTGQRTAT
KDLGRMPVRRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYSQFPVNVRALSRFQSEAESKA
TLAGLKDGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQAFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASASSEDDIKAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVGDIVLQGPNIRFAPVELRESQELRLKRLYPKTVIKPAVH
QILVPRPTTGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggtctgctggatgtcgtcgtacgtgatccggcgctcgacgaagcggtg
aaggccgccggtgacggccaccggatgcacatcgacctggtgggcccgcccgccgcgcgg
cccttcgccgtcgccgcgctggccagggacgccgggcggacggtcctcgcggtcaccgcg
accggccgggaggcggaggacctggcggccgcgctgcgcaccatgctgccgccggacacg
atcgcggagttcccgtcctgggagaccctgccgcacgagcgcctgtcgccccgctccgac
accgtgggccgccggctcgccgtgctgcggcgcctcgcgcacccgagcgccgacgacccg
gagaccgggccggtctcggtcgtcgtcgcgccgatccggtccgtgctccagccgcaggtc
aaggggctcgcggacctggagccggtcgcgctgcgcaccgggcagagcgccgacctcggg
gagaccgtggaggcgctggcggcagccgcgtacgcccgggtcgaactggtcgagaagcgc
ggcgagttcgcggtgcgcggcggcatcctcgacgtgttcccgcccaccgaggagcacccg
ctccgggtggagttctggggcgacgacgtcgaggagatccgctacttcaagatcgcggac
cagcggtccctggaggtcgccgagcacggcctgtgggcgccgccctgccgtgagctgctg
ctgacggacgaggtgcgggagcgggccgccgcgctcgccgaggcccacccggagctgggc
gaactcctccacaagatcgccgagggcatcgcggtggagggcatggaatccctcgcgccg
gtcctcgtggacgacatggagctgctgctcgacgtgctgcccaagggcgcgatggccgtc
gtctgcgaccccgagcgggtccggacccgggccgcggacctggtcgcgaccagccaggag
ttcctgcaggcgtcctgggcggcgtcggcgggcggaggcgaggccccgatcgacgtcggc
gcggcctcgctgcggggcatcgcggacgtccgcgagcgggcccgtgagctggacatgatg
tggtggtcgatctccccgttcgcggccgacgcggagctggacgacgacacgctgccgctg
ggcatgcaggcgcccgagatgtaccggggtgacaccgcgcgggcgttcgccgacacgaag
ggccggctggccgacggctggcgcacggtgtacgtcacggagggccaggggctcgcctcg
cgtacggtcgagatgctgggcggcgaggggatcgcggcccggctcgacccggacctggac
gagatctccccgtcggtggtccacgtctcgtgcggggccatcgaccacggcttcgtccac
cccggcctgaagctcgccgtgctcacggagaccgacctcaccgggcagcgcaccgccacg
aaggacctgggccggatgccggtccggcggcgcaagacgatcgacccgctgacgctggag
accggcgactacatcgtgcacgagcagcacggcgtgggccgctacatcgagatggtgcag
cgcacggtgcagggggcgacgcgcgagtacctgctcgtcgagtacgccccggccaagcgc
gggcagcccggcgaccggctgtacatcccgaccgaccagctggagcaggtcaccaagtac
gtcggcggcgaggccccgaccctgcaccggctcggcggcgcggactggacgaagacgaag
gcgcgcgccaagaaggccgtcaaggagatcgctgccgacctgatcaagctgtactcggcc
cggatggcggcccccggccacaccttcggcccggacaccccctggcagcgcgagctggag
gacgcgttcccgtacgccgagacgcccgaccagctgacgacgatcgccgaggtcaaggag
gacatggagaagtcggtcccgatggaccggttgatctgcggcgacgtggggtacggcaag
acggagatcgcggtgcgcgccgcgttcaaggcggtgcaggacgggaagcaggtcgccgtc
ctcgttccgaccacgctgctcgtgcagcagcactacggcacgttcaccgagcgctattcc
cagttccccgtcaacgtacgcgcgctgagccgcttccagtccgaggccgagtccaaggcg
acgctcgccgggctgaaggacggttccgtcgacctggtcatcggcacccaccggctgttc
tcatcggagacgaagttcaaggacctgggcctcgtcatcgtggacgaggagcagcggttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtggacgtgctgaccatg
tccgcgacgcccatcccccgcacgctcgaaatggcggtcaccggcatccgcgagatgtcc
acgatcaccaccccgccggaggagcgccacccggtcctgaccttcgtcgggccgtacgag
gagaagcagatcggcgccgcgatccggcgtgaactgctgcgtgagggccaggcgttctac
atccacaaccgggtcgagtcgatcgaccgggcggcggcgcggctgcgcgagatcgtgccc
gaggcgcggatcgccacggcgcacggccagatgtccgaacaggccctggagcaggtcgtg
gtggacttctgggagaagaagttcgacgtgctggtctccacgacgatcgtggagtcgggc
atcgacatctccaacgcgaacacgctgatcgtggagcgcggcgacaacttcggcctctcc
cagctgcaccagctgcgcggccgcgtcggccggggccgcgaccggggttacgcctacttc
ctgtacccgccggagaagcccctgacggagaccgcccacgagcgcctggccacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggccatgaaggacctggagatccgcggc
gcgggcaacctcctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtacgcatggtgggcgaggcggtcgcggactaccgggcgtccctggagggcggcgtg
gaggaggaaccgccgctggaggtcaagatcgagctcccggtcgacgcgcacgtcccgcac
gactacgcccccggcgagcggctgcgcctccaggcgtaccgctcgatcgcctcggcgtcc
tcggaggacgacatcaaggcggtccgcgaggagctgacggaccgctacggcaagctcccg
gaaccggtcgagaacctgctcctggtggcgggcctgcgcatgctggcccgcgcctgcggg
gtcggcgacatcgtcctccagggcccgaacatccgcttcgcgccggtggagctgcgcgag
tcgcaggaactccgcctgaagcggctgtacccgaagacggtgatcaagccggcggtccac
cagatcctggtgccgcgcccgacgacgggcaagatcggcggcaagccggtggtggggcgg
gagctgctggcgtggacgggggagttcctgacgacgatcctggggtcgtga
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