Seriola dumerili (greater amberjack): 111216888
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Entry
111216888 CDS
T05606
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03013
Nucleocytoplasmic transport
sdu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111216888
03015 mRNA surveillance pathway
111216888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111216888
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111216888
5.6.2.5 RNA 5'-3' helicase
111216888
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111216888
mRNA cycle factors
Common to processing body (P body) and stress granule
111216888
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
111216888
NCBI-ProteinID:
XP_022594292
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSGNQGTSQGNGP
NSQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcttggacaccgaggaa
gcggagttgctcggagcggatacccaaggctccgagtacgatttcaccgatttcaccctt
cccagccagacgcaaactcaaggccagacccagagccagctggacagccaggtaaatggt
cctgatgagggtcttcacaatggtggagtggatgactccgtggccaaagccagccaactg
ttggccgagctcaactttgaggaggatgaagaagacacgtactacaccaaagacctgcct
gtgcacgcttgcagctactgtggtatccatgatccagcatgtgttgtgtactgcaatacc
agcaagaagtggttctgtaatggacgtggcaacacatctggcagccacattgtgaaccac
ttggtgagagccaaatgcaaagaggtgacactgcataaagatgggccgctgggtgagacg
gtgctggagtgttacaactgtggctgtcgcaatgtcttcctcttgggcttcatcccagca
aaggctgattctgtggtggtgttactctgcaggcagccatgtgccagccagagtagctta
aaagacatcaactgggacagctcacagtggcaaccattgatccaggatcgctgctttttg
tcctggctggtgaagattccatcagagcaggagcagcttcgagcccgtcagatcaccgcc
cagcagatcaacaagttggaggagctatggaaggacaatcccactgccaccttggaagac
ctggagaaacctggcgtggacgaggagccccagcatgtgctgctgcgctatgaggatgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggttgatgcaa
ggtgatgaaatctgcctgcggtacaagggagacctggctccactgtggaaaggcattggc
catgtcatcaaagtccctgacaattatggggatgaaattgccattgagttgcggagcagt
gttggagcacctgtggaaataccccacaacttccaggtggactttgtgtggaagtccact
tcctttgacaggatgcaaagcgcccttaagacgtttgcagtggatgagacctcagtgtct
ggctatatttaccacaaactgctgggccatgaggtggaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgctcagggcctgcctgacctgaatcactcacaggtgtacgct
gtgaagacagtgctgcagaggcccctcagtctgattcagggtcctcctggcactgggaag
acggtcacctccgccactattgtttaccacctgtcccgacagggcaatggcccagttctg
gtgtgtgctcccagtaacattgctgtggaccagttgaccgagaagatcgacaagactggg
ctgaaggtcgtcaggctatgtgccaagagccgggaggccattgagtcaccagtgtctttt
ctggctctgcacaatcagatcagcaacatggacagtatgccggagcttcagaaactacag
cagctgaaggatgagactggtgagctgtcatctgctgatgagaaacgctacagggctttg
aaacgcacagctgagagggagctgctcatgaacgctgatgtgatctgctgcacctgtgtc
ggggctggagacccccgcctggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccaccgagccagagtgtatggtgcctgtggttttgggagccaagcagctcatt
ctggtgggtgaccactgccagttgggtcctgtggtgatgtgtaagaaggcagccaaggca
ggcctgtcccaatccctgtttgaacgcttggtggttctggggatccggcctatccgcctg
caggtccagtaccgcatgcacccagctctcagtgccttcccctccaacatcttctatgag
ggctccctgcaaaatggtgtcactgcagctgaccgcatcaagaaaggctttgacttccag
tggccacagccggacaagcccatgttcttctatgtgactcagggccaggaggagattgcc
agctctggaacctcctacctcaacaggacggaggctgccaatgtcgagaagatcaccacc
aggctgctgaaggctggagccaaacccgaccaaatcggcatcatcaccccatatgagggt
cagcgttcttacctggtccagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaattgccagtgtggatgccttccagggcagagagaaggacttcatcatc
ctttcttgtgttcgtgccaatgagcatcagggcatcggcttcctgaatgacccccgtcgt
ctcaacgtggcgctgaccagagccaagtatggtgtcatcattgtggggaaccccaaggcc
ctctctaagcaaccgctgtggaacaacctgctgaacaactacaaagagcagaaggtcctg
gtggaggggcccctcaacaacctgagggagagcctcatgcaattcagcaagccccgcaag
ttggtcaacaccatcaaccctgggggacgttttatgagcactgccatgtacgatgcccgt
gaggccctcatccccggctctgcctacgaccgcagcaatgctgctggacgtccgtccaac
atgtactttcaaactcatgatcagattgggatgattggggcaggccctggtcatatggct
gctatgaatatccccatacccttcaacctggtgatgccaccaatgcctccacccagctac
ttgggtcagaccaatggccctgctgcaggtcgtggagctatgaagggtaagcctgggcgt
ggcgggcgtcagagggtccgtggctctggaaaccagggtaccagtcaaggtaatggacca
aacagccaggccagccaggatggagcctcccagtccttctcccaggggccactgacacag
ggatacatctccatgagccagccctctcagatgagccagcctggcctctcccagccagag
ctctcccaggacagttacctgggcgatgagttcaagtcccaaatcgatgtggctttgtcc
caggactcgacttaccagggtgaacgtgcataccagcatggcggggtgactggactgtca
cagtactaa
DBGET
integrated database retrieval system
