Seriola dumerili (greater amberjack): 111229733
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Entry
111229733 CDS
T05606
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdu03000
]
111229733
Transcription factors [BR:
sdu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
111229733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
AAA_23
MPS2
Motif
Other DBs
NCBI-GeneID:
111229733
NCBI-ProteinID:
XP_022611919
LinkDB
All DBs
Position
Unknown
AA seq
778 aa
AA seq
DB search
MMSSMRATPPFHPPSEEEEAIGQDNAAWAKEEREGPKETPSPSSHDQPHPDELQPVREKP
TDIEWESVGPAAMDNESSKGCSVYSYRTNSTSPHKPEECSRDRGEPMIGLAFGTPERRKG
SLADVVDTLKQKKLVELTKTEQDEPSCMERLLSKDWKERVDRLNANELLGEVKGTPESLE
EKERQLSTMIGQLINLREQLLAAHDEQKKMAASQLEKQRQQMELARQQQEQIARQQQQLL
QQQQKINILQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAQQGFLFPPGMSYKPAGENYP
MQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQISPGAKMAPLPQAPNSSGPLSPSALKS
EKRASSPVAQIKEEGSTQPLNLSARPKTAEALRSPTSPTQSLFSGNKTSPTGMGKGRIPS
PIPSMGRNTSLDILSSLNSTALFGDQDAVMKAIQEARSMREQIQREQLHQQQQQHSGHQS
LEAKLSALSSMSLNNGNKERLHYETLSQHLGKLGEDAGKMVHRVIDLTRPEDLDGSNITE
ARVFREARGRNSNEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKAMTN
QEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQF
FVGPQPPIPLGNSPGGVGVYPGAITMATTATPSPHLTSDCSSNSASPEPAIPVIQSTYGV
KSEPVSGGGSNGGGVGALDLPSDPTNGDDDMDMYEDFEDEPKSDYSSDHETREAVSAN
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatgcgagcaacgcctccctttcacccaccgtctgaggaagaggaagcg
ataggtcaggacaacgcggcctgggccaaagaagagcgagagggcccgaaggagacgccg
tcgccctcctcgcatgaccaaccccaccccgacgagctgcagcccgtcagagagaaaccc
acggatattgagtgggagagcgtcgggcccgctgcgatggataatgagagcagtaaaggc
tgctcagtctactcctaccggactaactctacctctccgcacaagccagaggagtgttcc
cgtgatcgcggggagcccatgatcggcctcgcgttcgggacgccagagcgccgcaaagga
agcctcgcggacgtggtggacacgctgaaacagaagaagctagtggagctgactaagaca
gaacaagacgaaccatcttgcatggagaggcttctgtctaaagactggaaggagcgtgtt
gaccggctgaatgccaacgaactgctgggggaggtcaaaggtacgccagagtccctggag
gagaaggagcgccagctttctaccatgatcggtcagctgatcaatctgagagagcagctc
ctcgccgcccatgacgagcagaaaaagatggccgcctcacagctggagaagcagagacaa
cagatggagctggccagacagcagcaggagcagatcgccagacaacagcagcagctcctg
cagcagcagcaaaagataaacattctccaacaacagatccaggtccagggtcacatgcct
cctctgatgatcccagtgtttcctcatgaccagcggtccttggctgctgcggctgctgca
cagcaaggcttcctcttcccaccgggcatgtcctacaagccagcaggtgagaattacccc
atgcagttcattccatcgacaatggcagctgcagcggcatctggactcagcccgttacaa
ctacagcagctgtacgcagcccagctggcaagcatgcagatctcaccaggagccaagatg
gctcccctcccgcaggctcccaactcctccggtccgctttccccctccgccctgaagagc
gagaagcgagcatccagtcctgtcgctcagattaaggaggaaggatccacacagccattg
aacctctcagccagacccaagacagctgaggctcttcgctccccaacgtccccgacacag
agtctgttctcgggaaacaagaccagtcctacaggcatgggcaagggccgcatccccagc
cccatccccagcatgggcaggaacacttctcttgacatcctgtccagcctcaactccaca
gcgctgtttggggaccaggacgcagtgatgaaggccatccaagaggccaggagcatgagg
gagcagatccagagggagcagctccaccagcagcagcagcagcactcaggacaccagagt
ctggaggccaagctgtccgccctcagcagcatgagcctcaacaacggcaacaaggagcgg
ctgcactatgagacactgagccagcacctgggaaagcttggggaggatgctgggaagatg
gtccaccgagtcattgacctgacaagaccagaagatctggatgggagtaatatcacggag
gcgcgagtgttcagggaggcgcggggcaggaacagcaacgagccgcacatcaagaggccc
atgaacgccttcatggtgtgggccaaagacgagcggaggaagatcctgcagaccttcccc
gacatgcacaactccaacatcagcaagatcctgggctctcgctggaaagccatgaccaac
caggagaaacagccgtactacgaggagcaggcccgtctgagcaagatccacttggagaaa
tatcccaactacaagtacaagccacggcccaagaggacctgcatcatcgacggcaagaag
ctgcgcatcggagagtacaagcagatgatgcggtcacgacgtcaggagatgaggcagttc
tttgtggggcctcaaccaccgattcctctcggcaacagcccgggtggggtaggagtttac
ccaggcgcaattaccatggcaacgacagccacaccatccccacacctgacctcagactgc
tccagcaactcagccagccctgaaccagccatccccgtcatccagagcacgtatggggtc
aagtccgagcccgtcagtggcggaggcagcaacggtggtggggtcggagccctggatctg
cccagcgaccccaccaacggagacgacgacatggacatgtacgaggactttgaggacgag
cccaagtcagactatagcagtgaccacgagacacgggaggccgtcagtgccaactga
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