Seriola dumerili (greater amberjack): 111231573
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Entry
111231573 CDS
T05606
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sdu03036
]
111231573 (chd6)
Chromosome and associated proteins [BR:
sdu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
111231573 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
111231573
NCBI-ProteinID:
XP_022614440
LinkDB
All DBs
Position
Unknown
AA seq
3126 aa
AA seq
DB search
PAPSAPKQRGRKPRDPAAAPVEKKKKGKRRNQEVAVQEGAESDDTTSMSALNMGGEDSQD
PLDNAKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRISALNATALAWQAEEPPED
EANIIEKILSVRTAKKETSPSEDQAEETEEFYVKYRNFSYLHCKWATLEELEKDPRIHQK
IKRFRTKQAQMKHLFTEPDDDLFNPDYVEVDRVLEVAVTTDTETGEEVTHYLVKWCSLSY
EEATWELQEDLDPEKIKEFEGIQKLPPDLRHMERPLPDKWQKLERSRDYRNGNQLREYQL
EGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLYEIFNMGIRGPFLIIAPLSTITNWER
EFRTWTHMNVIVYHGSQISRQMILQYEMFHRDPQGNTLPGVLKFHGLITTFEMIMADCPE
LKKLHWRCVVIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEP
LQFPSESSFLEEFGDLKTDEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNI
QKKYYRAILEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILESFKKCH
SPDAPDFQLQAMIQAAGKLVLIDKLLPKLLAGGHKVLVFSQMVRCLDILEDYLIQRRYTY
ERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQND
LQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGVQQ
LSKLEVEDLLKKGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASF
ISSGNRTDISLDDPNFWQKWAKIAEVEIDSKSEKESLVIDTPRVRKQTRHYNSFEDDELM
EFSELDSDSEERPCRTRRLGDRSRRYLRAECFRVEKNLLIFGWGRWKDILNHGRFKWHLA
ERDMEVICRALLVYCLRHYKGDDKIKSFIWDLITPTKEGQDQALLNHSGLSAPVPRGRKG
KKLKNQLNVPGEVKNADWLVHCNPEVVLQDESYKKHLKQHCNKVLLRVRMLYYLKVEVLG
EAANQAVEGIPASKLEVSLPDIDYIEIPATWWDADADKSLLIGVHKHGYERYNAMRADPE
LCFLERVGMPDVTALSAEQGGGEVATDITDSVCKTEEAKDDTESKADAGEDRDESSKVKT
KGEETCSSTDTSDKPDSTGPDSQMSGDLCAQDSTLVTTTTTGTGTGVAALHVVQARPLWP
TGPALTARLRRLITAYQRFTLRREPLLRHDFLLHDGLVGMGMGGTGASHGHHAGGPLAWQ
LGEELRRCSVVATEPDPLFLEWQRRWTRREQADFYRTVSSFGVVYDPERKTFDWSQFRAL
ARLERKTDESLERYFNSFVNMCRTACKLPPRKEEGLVDPSVLVEPLTEERAARTLYRIEL
LRKIREQVLRHPLLSARLQLCRPSLYLPVWWETGKHDRDLLIGAARHGLSRTDFYILNDP
QLTFLEAHRNYVRGQPSHIHPQSHHHPHHPGLAAHPGISSSSSSSAHPQLPHPHCCLYDS
GLGHHSPQPPEYPHQSSHHHQHHHQHHTVPPSAPSPSSSSSSSSHPHLHPPPLDAHDSAS
PSLGIVPGSRGDFLDCPPLDETLELSSLQHDAMSADALHGGKASKDALNGFPFNSAAGGQ
SMLNSYGVGGTDLDSKLRSDVLVGEQGSSEETGLMAPSVELDQLQAPWDGTDHSSPAHHM
FNESDPILGPSALETGFLEEEDEEAQGGDRGAEEGGTLEECLGLPPSSSPSHPSAGDSVE
PLSSSYMLFKDIGVSEEPSADQTDLSASPPPPYVPPPPLSLSDITAHEPQDRLGHPDVTE
SLTNPVDEVEEREGGAGFEFDDKEEEDVEDLSRRTVGKRGGPSLEGERCDSDRGADQSLG
HMAQIDGLEPEQDERLELQESFRQAEDKADVHPYLGKLEQCPESIEEPGEEVDGLILYQA
VEEETMEDSIESGALMGNASREDGSVEHTDLSDQVDEISEGQVDHVSLMDVQDVQVVQSR
DQTAEKAAKQSNAKAGEMELDSIYSECAKPSSASLSSVTIESKSDETTGGKAGVKTEVSM
DQDSYDGTAEDSFDQDNKEHLLEQNEIKIAAALPENSADTKPPGLKFSPSPDSVGERKPA
QLELPIKVEETKTEIAEEVLPIYPDSSEVKHAKFLTYTVKSEDLVTKAEQLDYPVKQEAL
EAKPEDLSLPMKAESLDSKPEVLQFAAFGAEIKPEAKPLSLGFAAYPDGAKLKSETKTEG
LRLTAFPDTSAIKPEAKPEGLEFAAFPDSSEIKPEAKPEDLEFTGLPEIKAETKQELLEA
DSTVLTPKLEQADGLVDASESQLVKGQEKALYSFSEWPKDRVIINRLDSICHAILKGKWP
WPSEQHDSPGSLTANSCLANSLAQHHHHRAGFLPTTASSSVPGQARVQQTSPGLGFSIPP
PLTRLPKYMPRGGACGRGAWRLTSLPLLQERLVAPPFLPELKRAGGRRSFDYEAAAAAAA
AAKKGPVVAPPSHRTGSMLINGWQEAAIDLTKSSAEISTTSGIGTGDAVVAPGISHHGAG
GGSSHKLPPPPPITAPLPGSVGIDMAGILQAGLIHPVTGQIVNGSLRGDDSLRRRRGRRR
NVEALYSEFTKSRGLHLPETQGRVEVISHSSVSSSTSSPSPSPSERPAGPPTPSSSSTPT
PTQTPPQPEIVAIDREAASKGLIEWLRQNPGYSMDLPAFTHVSSGAGLLHGFVERPKQRR
HRCKDPTKLDINSLTGEERVPVVHRGTGRRLGGAMAPAIKELSRWLDANSEYYVAPDWAD
VVKHSGFLPEGKFSRILTEPVNRDPGSRRRGRRPRSEMPKPLLSVSDSASSGLGPPLFMN
GGLIGSMDSMVAMQNLRGGIPGIPISGIMAAGFPHGFPAAVQAGGAGASAEDAKNGLSML
PMMLHGIPHPHGAAIPQHALFSVGAMMAHTQPPPPPHPSSTSSTSSSSSLSAPKVTTTTA
PSTSEAVSPSSTTPAEKESASAAGGEKERSREEKGAAESNKRPGGVEAAAIITSTSRAHL
SSAHLGASAGSHLTFNPFLIPGMSHGLLYPHMFLPHGGIMALPAMPPGAIDGSPGSPKRR
RKRGRE
NT seq
9378 nt
NT seq
+upstream
nt +downstream
nt
ccagccccctcagcgccaaaacagaggggccgcaaacccagagatcctgccgcggcgcca
gtggagaagaagaagaaggggaagaggagaaaccaggaagtggctgtccaggagggggcg
gagagtgacgacactacctcaatgtcagccctcaacatgggtggagaggacagccaggac
cccctggataatgcgaagcggcgttcgggacgacaggtcaagaggaggaagtataacgag
gatttagactttaaggtggtagacgatgacggagagaccatcgcggtcctgggagccggt
cgcatctcggcgctgaacgccaccgctctggcgtggcaggccgaggaaccacctgaggac
gaagccaacatcattgagaaaattctgtctgtcagaacagcgaagaaagagacttcgccg
tcagaggaccaagcggaggaaacagaggagttttacgtcaagtacagaaatttttcctac
cttcactgcaaatgggccactctggaggagctagagaaggatcctagaatccaccagaag
ataaaacgcttcaggaccaaacaagcccagatgaaacacctgttcaccgagcctgatgac
gacttgtttaacccagactatgtcgaggtggacagagtgctggaggtggctgttaccaca
gatactgagactggagaggaggtgacccattacctcgttaagtggtgcagtctctcgtac
gaggaggcgacgtgggagctgcaggaggacctggacccggagaagatcaaagagtttgag
gggatccagaaactgccgccggacctcagacacatggaacgtcctcttccagacaagtgg
cagaagctggagcggagcagagattaccgcaacggaaaccagctcagagaataccagtta
gagggaatgaactggttactgttcaattggtacaacaggaaaaactgcatcctggcagat
gaaatgggtttgggaaagacgatccagtccatcaccttcctgtacgagatcttcaacatg
gggatccgcggccccttcctcatcatcgcccccctgtccaccatcaccaactgggagagg
gagtttcgcacgtggacgcacatgaacgtcatcgtgtaccacggctcccagatcagccgg
cagatgatcctgcagtacgagatgtttcacagagacccgcagggtaacaccctccccggc
gtgctgaagtttcacgggctgatcaccaccttcgagatgatcatggccgactgcccggag
ctgaagaagctgcactggcgctgcgtggtgatcgacgaggctcaccgcctgaagaacagg
aactgcaaactgctggaggggctcaaactcatgaacctggaacacaaggttctgctgacg
ggaacccctctgcagaactctgtggaggagctgttcagtctgttgaacttcctggagccg
ctgcagtttccctccgagagcagcttcctggaagagtttggtgacctcaaaacagacgaa
caggtgaagaagcttcaggccattttgaaacccatgatgttgcggcgactgaaagacgac
gtggaaaaaaacctggcgcccaaagaagagaccatcatcgaggtggagttgaccaacatc
cagaagaaatactaccgagccatcttagagaagaacttctccttcctgtctaaaggagcg
aaccaacacaacatgcccaacctcatcaacaccatgatggagctccgcaagtgctgcaac
catccctacctgatcacaggagcagaggagaagattctggaaagcttcaagaaatgccac
agtccggacgcgccggatttccagctgcaggccatgatccaggcggccggtaaactggtg
ctgatcgacaagctgctgcccaagctgctggccgggggacacaaagtcctggtcttctcc
cagatggtccgctgtctggacatcctggaggactacctcatccagagacggtacacgtac
gaacgcatcgacggccgcgtgcgagggaacctgcggcaggcggccatcgacaggttctgc
aagccggactcggaccgcttcgttttcctgctgtgcaccagagccggagggctgggcatc
aacctgacggccgccgacacctgcatcatcttcgactcggactggaacccgcagaacgac
ctgcaggctcaggcacgctgccaccggattggccagagcaaagcggtgaaagtctacagg
ctgatcaccaggaactcgtacgagagggaaatgttcgacaaggcgagtctgaagctcggc
ctggacaaagccgtcctgcaggacatcaaccgaaaaggaagcctgaacggggtgcagcag
ctttcgaagctggaggtggaggatctgttgaaaaaaggagcgtacggcgccctgatggac
gaggaggacgagggctccaagttctgcgaggaagacatcgaccagatccttcagagacgg
actcagaccatcaccatccagtctgaggggaaggggtccacgttcgctaaggccagtttc
atctcgtctggtaacagaacagacatttctctggacgacccaaacttctggcagaaatgg
gccaagatcgctgaggtggagatcgactccaaatctgagaaggagtccctggtgatcgac
acgccccgggtgaggaaacagacccgtcactacaactccttcgaggacgacgagctgatg
gagttctcggagctcgacagcgactcggaggagaggccgtgccgcacccgtcgcctgggc
gaccgcagccggcggtacctccgcgccgagtgtttccgggtggaaaagaacctgcttatc
ttcggctggggtcggtggaaggacatcctgaaccacggtcggtttaaatggcacctggca
gagagagatatggaggtcatctgtagggctctgctggtttactgcctcagacactataaa
ggtgacgacaagatcaagagcttcatctgggacctgatcacacccaccaaggaaggccag
gaccaggcgctgctcaaccactccggtttgtcagctccggttcctcggggtcggaagggg
aagaagctgaagaaccagttgaatgttcccggtgaagtgaagaacgccgactggctggtc
cattgtaaccctgaggtggttctgcaggacgagagctacaagaaacacctgaagcagcac
tgcaacaaggtgctgctcagggtgaggatgctgtactacctgaaggtggaggtgctgggt
gaggcagccaatcaggctgtagaggggatacctgccagtaaactggaggtgtcgctccca
gacatcgactacatcgagatcccagcgacgtggtgggatgctgatgctgacaagtctctg
ctcataggagtccacaaacacggatacgagcggtacaacgccatgcgtgctgatccagaa
ctgtgtttcctggagagggtggggatgccagatgtcaccgcgctgtctgctgagcagggg
ggaggagaggtggccaccgacatcactgacagcgtctgcaaaacggaggaggcgaaggac
gacacggagagcaaggctgatgcaggggaggatagagacgagagcagcaaggtgaagacg
aagggagaggaaacctgctccagcaccgacacctcagacaagcctgacagcacaggtcca
gactcccagatgtcaggtgacttgtgcgcccaagacagcactttggtcaccacgacgaca
acaggaacagggacgggtgtggcggcactgcacgtggtccaggccaggcccctgtggccc
accggccccgccttgacggcgcgtttacggcgcctcatcaccgcctaccagaggttcacg
ctacgccgcgagccgctgctcagacacgacttccttctccacgacggcctcgtcggcatg
gggatgggagggactggcgcctctcacggtcaccacgccggcgggccactggcgtggcag
ctgggtgaagagctgaggaggtgttcggtggtcgccacagagcctgacccgctgtttctg
gagtggcagagaaggtggactcgtcgggagcaggcagacttttaccgcaccgtgtcgtcg
ttcggggtggtgtacgaccccgagaggaaaaccttcgactggtcccagttcagagcgctg
gcccggctggagaggaagacggacgagagtctggagagatacttcaactccttcgtcaac
atgtgcaggacggcctgcaagctgccgccgaggaaggaagaaggtctggtggaccccagc
gttctcgtggagcctctgacggaggagcgagcggcccggactctgtaccgcatcgagctg
ctccgcaagatcagagagcaggttctccgtcacccgttactctcggcccgcctccagctg
tgccgcccctcgctctacctcccggtctggtgggagaccggcaaacacgaccgcgacctc
ctcatcggggcggcacgccacggcttgagtcgcaccgacttctacatcctcaacgacccg
cagctgaccttcctggaggctcacaggaactacgtcaggggacagccctctcacatccat
cctcaaagccaccaccaccctcaccatccgggcttggcggctcatccgggcatctcgtcc
tcatcttcctcctcggctcacccgcagctgcctcatcctcactgctgtctgtacgactct
gggctcggtcaccactcccctcagcctcccgagtacccccaccagtcctcccaccaccac
cagcaccaccaccagcatcacactgtgcctccatcagctccctcgccttcttcctcctct
tcctcctcctctcaccctcacctccaccctccgccgctggacgcccacgactcggcctca
ccgagcctgggaatcgtccccgggtcgcggggagatttcctcgactgtcctcctttggat
gaaacgctggagctgagttccctgcagcacgacgccatgtccgcagacgccctacacgga
gggaaggcatccaaagacgccctcaacggcttccccttcaactcggcggcgggaggtcag
agcatgctcaactcgtacggtgtcgggggaaccgacctggactccaaactgaggagtgac
gtgctcgttggtgagcagggctcgtcagaggagactgggctgatggcgccatcagtggag
ctggaccagttacaggctccctgggacggcacggaccactccagtcctgctcaccacatg
ttcaacgagtccgatccgatcctgggtccctccgctctggagaccggcttcctggaggag
gaggacgaggaggcgcaggggggagacagaggagcggaggaaggtggaaccctggaggag
tgcctgggcctcccgccctcgtcctctccctcccatccctccgcaggagactccgtggag
ccgctgtcctccagctacatgctctttaaggacatcggcgtgagcgaggaacccagcgcg
gatcaaacagacctgtcagcgagcccccctccgccctacgtgccccctcctcccctctct
ctgtctgacatcaccgcccacgagccgcaggataggctgggccaccccgacgtcaccgag
agcctcaccaatcccgtggacgaggtggaggagcgggaaggaggcgcggggttcgagttc
gacgacaaggaggaggaagacgtggaggacttgtcgaggcggacggtgggaaaacgagga
ggtccgagtctggagggagaacggtgcgattcagaccgaggtgcagaccaaagtttggga
cacatggcccagatcgatgggttagagccggagcaggacgagagactggagcttcaggag
agtttccgtcaggcagaagacaaagcagacgtgcatccttacctcgggaagctggagcag
tgtcctgagtctatagaggaacccggggaggaggtggacgggttgattttgtatcaggcc
gtggaggaagagacgatggaagattcgatcgaatcgggagccttgatggggaacgcgtcc
agagaggacggttcggtggagcacacggatctctcagatcaagtggatgagatctcagag
ggtcaggtggatcatgtgtctctgatggacgttcaggacgttcaggtcgttcagtcacgc
gatcaaacggcggagaaggcagcgaaacagtcgaacgccaaagccggcgagatggagctg
gacagcatttactccgaatgcgcgaaaccctcctctgcttccctttcatccgtcacaata
gaatccaagtctgacgagaccaccggcgggaaggctggagtcaaaactgaagtctccatg
gatcaggacagctatgacggaacagctgaggactccttcgatcaggacaacaaagagcat
ctgcttgaacaaaacgaaatcaaaatcgccgccgctctgcctgaaaacagcgctgacaca
aaaccgcctggtcttaaattctctccttcaccggacagtgttggtgagaggaaaccagct
caactggagctgccgatcaaggtcgaggagacaaagacggagatcgctgaggaggtgtta
cccatctaccctgacagctctgaagtcaaacacgctaaattcctcacttacaccgttaag
tcagaagacctggtgaccaaagctgagcagttagactatcccgtgaaacaggaagcactg
gaggccaaacctgaagatctcagcctccccatgaaggccgagagcttagacagtaaaccc
gaggtcctccagtttgcagcttttggcgccgaaatcaaacctgaagccaaaccgctgtca
ctcgggtttgctgcgtatccggacggagccaagctgaagagcgagacaaaaacagaaggt
ttaaggttgacggcttttcctgacacgtctgccatcaagcccgaagccaagccagagggt
ctggagttcgcagccttcccagacagctctgagatcaaacccgaggccaagccagaggac
ctggagttcacgggtctgcccgagatcaaagctgagacgaagcaggagctgctggaggcg
gacagcaccgtcctgaccccgaagctggagcaggcggacgggctggtggacgcctcggag
agccagctggtgaagggtcaagagaaagcactttattccttttctgaatggccaaaggac
cgggtgatcatcaaccgcctggacagcatctgccacgccatcctgaaggggaagtggcct
tggccgagcgagcagcacgactctcccggctccctgactgccaactcctgtctggccaac
agcttagcccagcaccaccaccaccgggcgggattcctccccaccacagcctccagctcc
gtcccgggccaggccagagttcagcagacaagccccggactggggttctccatccctccc
cctcttacgagactacctaagtacatgccgcggggcggtgcatgcgggcgcggagcttgg
cgcctcacctccttgcctctcttacaggagaggctcgtggctcctcccttcctccccgag
ctcaaacgcgcaggaggtcggaggtctttcgactacgaagccgctgcagcagctgcggcc
gctgccaaaaaggggccggtggtggcccctccctctcaccgcacgggatccatgttgatc
aacggttggcaagaagcagccatcgatctaaccaagtcgtctgcagaaataagcaccact
agtggcatcgggacaggcgatgctgtggttgcaccgggaatcagccaccacggcgctggt
ggcggcagcagtcacaagctgccgccgccgccccccatcacagcacccttaccgggctct
gtgggcatcgacatggccgggatactgcaggccgggctcatccatcctgtaacagggcaa
atagtaaacgggagcctgaggggagatgactcactgaggaggaggagagggaggaggaga
aacgtggaagctctgtactctgagttcaccaagagccgaggactgcacctccctgagaca
cagggccgagtggaggtgatcagccactcctctgtctcctcctccacctcctcgccgtcc
ccctctccgtcagagcggcccgcgggtcctcccacgccgtcctcctcttccacgcccacc
cccacccagacgcctcctcagccggagatcgtggccatcgacagagaggcggcgagcaaa
ggcctgatcgagtggctgagacagaacccgggctacagcatggacctgcccgcgttcact
catgtaagttccggagcgggtctgttacacggttttgtggagcgacccaagcagaggagg
catcgctgcaaagacccgactaagctggacatcaactctttgacgggggaggagagggtt
cctgttgtgcaccgaggcaccggacgcaggctcggtggcgccatggctccagccataaag
gagctctcccggtggctggacgccaactcagagtactatgtagctccagactgggctgac
gtggtcaaacactctggtttcctccctgaggggaagttctctcggatcctgacagaaccc
gtcaacagagacccgggctctcggcgccgtggacgtcggcctcgcagtgagatgcctaag
cccctcctgtccgtttctgactccgcctcgtctggcctcggcccccccctcttcatgaac
ggcggtttaatcggcagcatggactccatggtggccatgcagaacctccgtggcggcatt
cccggaattcccatctccgggatcatggcagctggattcccacacggtttccctgcagca
gtgcaagcgggaggagccggggcgtcggcggaagacgccaagaacgggttgagtatgtta
cccatgatgctgcacggcatccctcacccgcatggagctgcgatcccgcagcacgccttg
ttcagcgtcggtgcgatgatggcgcacacccagccgccgcctcctcctcaccccagctcc
acctcgtcgacctcttcttcttcttcactgtccgctccgaaggtcaccacgacgaccgcc
ccctccacgtctgaggctgtgagcccctcgtcgacgacgcctgctgagaaagagagcgct
tctgctgccggtggcgagaaggagaggagccgggaggagaaaggagcagcggagtccaac
aaaaggcccggaggggtggaggcggcggccatcatcacctccaccagcagggcccacctc
agctcggcgcacctcggagccagcgccggcagccatcttaccttcaaccccttcctgatc
ccgggcatgtcccacggcctgctgtacccgcacatgttcttgccgcacggtggcatcatg
gcgctgcccgccatgcctcctggtgccatagacggttccccaggaagcccaaagaggagg
aggaagagagggagggag
DBGET
integrated database retrieval system
