Seriola dumerili (greater amberjack): 111233237
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Entry
111233237 CDS
T05606
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111233237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111233237
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111233237
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111233237
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
111233237
NCBI-ProteinID:
XP_022616726
LinkDB
All DBs
Position
Unknown
AA seq
936 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGMWLTNTIDMLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDSVQVEAIRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEDIPQSLVA
TSPPGHSHLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSSSSSSSSSSSSSSSSVSGLTSSSLVSMATIAGGGSSGSGGNS
HHGNSGVLLSNTSAGSYSNATQQQPHPSAQQQQAKNSVSSSSSAPITNPSTSTNSHPASS
ASSPPNASTQGLMTSNLQPLTPSGPTPTSNSFGLGLGLSLGKGGMSGSITTSPMSGGLGL
SGMPASLSTMAGLLSSSTPAPYAQAAASGTVGSGLPGSLGGISTTSTNSAVGSIGSGSIT
VGGPTSTTAGLLGAAVGVTGIGSGILGLGSSQSGVQGSSLMSPSPVGGLAPGSGVGVIGS
NGGSSGSAGSGVVGGNLSLSVRPPSRQKQNGSTSYSAVVADSTTESALNSASQSQSSQPS
SLTSTANQPKDTGPSLLGSMSLSSSSPSPASYSEAKTQSSGSLLNGPLSYSQSSESIKPQ
EPLSSLKSMAERAALGSGMEGDVPSLHLTPDIFPSSTTAPSGPPSAPQPSLSEVSIPPSL
GVCPLGPVPLSKDQLYQQAMEEAAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHS
DTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITD
EFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggag
ggagtagaacagtttgaagacatctggcaaaagcttcacaacgcagccaatgccaaccag
aaggagaaatatgaagcagacctcaagaaagagattaaaaagctacagcgtcttcgagac
cagatcaagacgtgggtggcatccaacgagatcaaagacaaaaggcagctagtggagaac
cgcaaactcatagaaacgcaaatggagcggttcaagatcgtggaaagagaaaccaagaca
aaagcctactcgaaagaagggctgggtctggctcagaaggtggacccggcccagaaggag
aaggaggaggtcgggatgtggctgacgaatacgatagacatgttaaacatgcaggtggac
cagtttgagagcgaagtggagtctctgtcggtccagacgagaaaaaagaaaggagacaag
gagaagcaggaccggatcgaggagctgaagaagttcattgagaagcatcgataccacatc
cggatgctggagacgatactgaggatgctggacaacgactcagtgcaggtggaagccatc
aggaagatcaaggatgatgtggagtactatctagactcgtcgcaggatccagactttgag
gagaatgagtttctgtacgatgacctagatctggaggacattcctcagtcgctggtcgcc
acctccccaccgggacactcgcacttggaggacgagatcttccagcactccagcagcaca
cccacctccaccacctcatcctcacccatccccccctcacctgccacttgcactacggag
aactcggaggacgacaagaagagaggacgttcaacagacagtgaagttagtcagtcacct
gtgaagaacggaaacccctcctcctcgttatcctcttcctcctcctcctcctcctcctct
tcctcctcctcctcctcctcctcctcctcttcttcctccgtctcaggactgacctcatcc
tcactggtctctatggcgaccatcgctgggggaggaagcagcggctctgggggcaacagt
catcatggcaactctggggttctcctctccaacacttccgctggcagctacagcaacgcc
acccagcagcagccgcacccgtcagcacaacaacaacaggccaaaaactcagtgagctcc
tcctcctcagctcccatcaccaaccccagcacctccaccaacagccaccccgcctcctcg
gcctcctctccccccaacgccagcacacaggggcttatgacttcaaacctccagcccctg
actccatcggggcccacgccgacctccaacagcttcggcctcgggctgggcctctctctg
gggaaaggcggcatgtccggctccatcaccaccagcccgatgtccgggggcctcggtttg
tcagggatgccggcgtccctgagcaccatggcaggccttctgtccagctccactccggca
ccctacgctcaggcagctgcctcgggcacggtcggctctggcttaccgggctccttggga
ggcatcagcaccacgtcgaccaacagcgcagtgggctccattggcagtggaagcatcaca
gtcggcgggccgacatctacaacagcaggtctgctgggcgcggcggtgggggtgaccggc
atcggctcggggattctgggtttgggttcgagtcagtcaggagtgcaggggtcctctctg
atgtcaccgagcccggtaggaggcctagccccaggaagcggagtaggagtcatcgggagc
aacggaggcagctcgggctctgcggggagcggagtggtgggaggaaacttgtcgctctct
gtcagaccgccaagccgacagaagcagaatggtagcactagttacagtgctgtggtagca
gacagcacaacagagtccgccctcaacagtgccagccaatcacaaagcagccaaccctcg
tctttgacctccacagccaatcagcctaaggacactggtcccagtttactgggctctatg
agtttgtcgtccagctctccgtcgccggcctcctacagcgaggccaaaacgcagagcagc
ggcagcctgctgaacgggccactgtcctattcacagtcctccgaaagcattaagccgcag
gagcctctgagcagcctgaagtccatggccgagcgagcagcactaggctcagggatggag
ggagacgtgccttccctgcacctcaccccagacatcttccccagcagcactacggccccc
tcgggccccccatcagcacctcagccctcgctgtcagaggtcagcatccccccgtcattg
ggggtctgcccgctggggcccgttcccctgtccaaagaccagctctaccaacaggcgatg
gaggaggcggcgtggacgcacatgccccacccgtccgactccgagaggatcaggcagtac
ctgatgaggaacccatgccccaccctgcctttccaccaccaggtgccaccgccccactct
gacactgtagagttttaccagaggctttctacagaaaccctcttcttcatcttttactac
ctggagggcactaaggcccagtatctggcagccaaagccctgaagaagcagtcgtggagg
ttccacacaaaatacatgatgtggtttcagaggcacgaagaacccaagaccatcactgat
gagtttgagcagggaacgtacatttactttgactatgagaaatggggccagcggaagaag
gagggtttcacgtttgagtaccggtacctagaagaccgagacctccagtga
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