Seriola dumerili (greater amberjack): 111237859
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Entry
111237859 CDS
T05606
Symbol
colec12
Name
(RefSeq) collectin-12
KO
K10062
collectin sub-family member 12
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
111237859 (colec12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdu04131
]
111237859 (colec12)
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
sdu04091
]
111237859 (colec12)
Membrane trafficking [BR:
sdu04131
]
Endocytosis
Phagocytosis
Opsonins
111237859 (colec12)
Lectins [BR:
sdu04091
]
C-Type lectins
Group 2: Type II membrane receptors (Asialoglycprotien and DC receptors)
Scavenger receptor with a CTLD (SRCL)
111237859 (colec12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Lectin_C
Tropomyosin
Chordopox_A33R
DUF724
Snapin_Pallidin
V-SNARE
Crescentin
Motif
Other DBs
NCBI-GeneID:
111237859
NCBI-ProteinID:
XP_022622868
LinkDB
All DBs
Position
Unknown
AA seq
741 aa
AA seq
DB search
MKDDFADEEEVQSFGYKRFGIQEGTQCTKCKNEWALKTSIALLYVLCTLLTIAVAVLGYK
VVQRIDSVSEGIANYGGKIIAVETDLKKLHDRTGEKSENTTTEIQTFKNNIRTLQRQLSA
VEERIHSDQVKLSQLQSIGSDIQSSQGSIQGLLDSNKATLRSVNGTLQSYGNIIEGLQED
TARLQRELQQQVKLQNQALISISSLDLTQSQQSGLIAALQHSVDDTSQAIQKMHIDFQNL
EQTTRHARSETEWLIGRVENLEVLASNASVLANANNISLEDVGSQLTFMANQLQDTSSQA
DAHDQTLREITDQQRIFSNFTSINFNRLEVRLDESERDIDRVTGNISFITQILGAINLNM
NDLRFTCSQTVGRHSVFLLNLNSSVTDVRTDASYLRSQQEVLAARLDREVTGLSIVMEEM
KLVDTEHSQRLSNFTILQGPPGPRGPKGDKGPQGSSGQQGQKGEKGEKGGPGIRGPRGEQ
GIPGPPGLPGLKGLPGVPGSPGSKGSRGSGGRAGPSGAKGEPGTAGLPGRDGQPGPQGAQ
GPPGIRGSVGPAGEQGPRGLPGPVGPPGAPGPPGQPGIQFRGPMIPLGPVSLQDEAVAPT
IWAPGCPVEWVNYRDKCYFFSRNLYSFDDANASCESKSASLLIINDMEEQRWLKKQTFGK
GYFWMGLTDKEEENVWRWLDGTEPAFTKWKPGQPDNWGHGHEIGEDCAGLIHEGLWNDFF
CEDLISYICEKDMETSRSLGS
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgactttgcagacgaggaggaagtacagtcttttggatacaagaggttcggg
atccaggagggcacccagtgcaccaagtgcaagaatgaatgggcgctgaagacctccata
gctctgctctatgtgctgtgtactctcctcaccatcgctgttgctgtacttggatataaa
gtggtgcaaagaattgacagtgtctctgaaggtatcgcaaactatggaggaaagataata
gctgttgagactgatttgaaaaagctacatgatcgaacaggggagaagtcagagaatacc
accacagagatccagacttttaagaacaacatcaggactcttcagaggcaactgtctgcg
gtggaggaacgcatccacagcgatcaagttaagctgagtcagctgcagagcattggctca
gacatccagagcagccagggctccatccagggactgctggatagcaacaaagccaccttg
cgctctgtaaatggcaccctgcagtcttacggcaacatcattgaaggtctacaggaagac
acagcaaggctgcagagagaactccagcagcaggtgaaactccagaaccaggcgctgatc
agtatcagcagcctggacctcacccagtcccagcagagtggcctcattgctgctctgcag
cactcggtggatgacaccagccaggccatccagaaaatgcacattgactttcaaaacctt
gagcaaacgacccgacacgcacgctctgaaaccgagtggcttataggtagagtggaaaac
ttggaagtcttggctagtaatgcctcagttctggcaaacgccaacaacattagccttgag
gatgtgggatcacagctcacttttatggccaaccagctccaggacaccagcagccaggct
gatgctcatgaccagaccttgcgggagattacggatcagcagaggatcttcagcaacttc
acgtccatcaattttaaccggctggaggtacggctggatgagtcggagcgagacatcgac
cgcgtgacgggcaacatcagcttcatcacgcagatcttgggtgccatcaacctaaacatg
aacgatttacgatttacttgttcccagacagtcggccgtcactcagtcttcttgttaaac
ctcaacagcagcgtgacagatgtgaggacagatgcatcatatctgaggtcccagcaggag
gtgctggcagcacgtctggacagggaggtcaccggcctctccattgtcatggaggagatg
aaactggtggacacagagcactcacaacgattaagcaacttcactattttacaggggccc
cctggtcccagagggccaaaaggcgacaagggacctcagggatcatctggtcagcagggc
caaaagggagagaaaggagaaaagggtggtccagggatacgagggcccagaggagagcag
ggtattccaggaccaccaggtctgccagggctaaagggtctaccaggcgtacctggcagc
ccagggtccaagggctcccgagggtcaggaggcagggccggaccttctggagctaaagga
gagccgggtactgccggtttgccgggaagagacggacagcctggccctcagggggcacag
ggcccaccaggtatcagaggctcagtgggaccagctggggagcaggggccaaggggacta
ccaggaccagtggggcctccgggagcaccaggaccaccaggacaaccaggaatccagttc
cgtggtccgatgattcctttgggccctgtgtctctgcaggatgaggcagtagctcctacg
atatgggcccccggatgccctgttgagtgggtaaattatagagacaagtgctacttcttc
tccaggaacctgtacagttttgatgatgcaaacgcatcatgcgaatcaaagtctgcctct
ttgctcatcatcaatgatatggaggaacagagatggctgaagaagcagacatttggaaag
ggttacttctggatgggtctgaccgacaaggaggaggagaacgtgtggcgctggctggac
gggactgaacctgctttcacgaagtggaagccaggtcagcctgacaactggggccacggg
catgaaataggagaagactgtgctggtctcatccacgaagggttatggaatgatttcttc
tgtgaagatctcataagctacatctgtgagaaggacatggagacctcaagatcacttggg
tcgtag
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