Seriola dumerili (greater amberjack): 111239385
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Entry
111239385 CDS
T05606
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03030
DNA replication
sdu03410
Base excision repair
sdu03420
Nucleotide excision repair
sdu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111239385 (lig1)
03410 Base excision repair
111239385 (lig1)
03420 Nucleotide excision repair
111239385 (lig1)
03430 Mismatch repair
111239385 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdu03032
]
111239385 (lig1)
03400 DNA repair and recombination proteins [BR:
sdu03400
]
111239385 (lig1)
Enzymes [BR:
sdu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111239385 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
111239385 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
111239385 (lig1)
DNA replication proteins [BR:
sdu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
111239385 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
111239385 (lig1)
DNA repair and recombination proteins [BR:
sdu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
111239385 (lig1)
NER (nucleotide excision repair)
Other NER factors
111239385 (lig1)
MMR (mismatch excision repair)
Other MMR factors
111239385 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
111239385
NCBI-ProteinID:
XP_022624978
LinkDB
All DBs
Position
Unknown
AA seq
1012 aa
AA seq
DB search
MQRSIASFFQPKSRDKDIQKKTADEPVIKPVKSPLKVQNGAVETDSPIKKVAKRSRQILD
SDDDEAPIVKEQVATKGQGDKETSSKKEKKDDVFKAVPTPMSPPPAPATPVTPATPATPA
SSASPGTPSTPNSISPTGAIKRKTARKMFPKRKLDESRSGSESQREEAEAKEEQGQQNKR
PRVETSASSAGNTSEPMEEGAKEEEVEKAVTEANSPDEEVENKKKEEGEKAMEEEQVENK
SSDEKEKKAEGAEKKNEAKEKTDDEKGLAVAKKEVVEKDTREGEESPKSQTAKKQKEAKE
QKDKEPAKKSPISSFFAPRKAAVKTEKPEKNEGEKKTSAERKSSAEESKDTKGEPTSGQT
DYNPSRPGYHPVDHACWKKGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSP
DDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAE
SSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYFSR
SLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILK
QTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFT
CEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDTEAVA
WDREKKQIQPFQVLTTRKRKDVDATEIKVQVCVYAFDLLYLNGESLVRQPLSRRRALLKE
SFSEVEGEFMFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLK
LKKDYLEGVGDTVDLCVIGAYMGKGKRTGTYGGFLLACYDDENEEFQSICKIGTGFKDED
LEQHYKFLKDHILPKPRAYYRVDQSAEPDMWLDAVQVWEVKCADLSLSPIYKAAMGMVDP
EKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagcatcgcctccttcttccagcccaagagcagagacaaggatattcagaag
aaaactgcagatgaaccagtgataaaacctgtcaagagtcctctcaaggtgcagaatggt
gccgttgaaactgattcacccatcaagaaggttgccaagcgcagccgtcaaatcctggac
agcgacgacgacgaggcaccaatagttaaagagcaagttgccaccaaaggacaaggagac
aaagaaacctccagtaaaaaagaaaagaaggatgatgtgtttaaggcagttcccaccccc
atgtctccaccaccagctccagccacccctgtaacaccggccactccagccaccccggcc
tcctcagcctcaccagggactcccagcacccctaactccatctccccgactggggccatt
aaacgcaagactgcgaggaagatgttccccaagaggaagcttgatgagagcaggagcggc
agtgagagtcagagagaggaggccgaggccaaagaggagcagggtcagcaaaataaacga
ccccgtgtggagaccagtgccagcagtgcagggaacaccagtgaacccatggaggaggga
gcaaaggaagaagaagttgaaaaggcagtgaccgaggctaacagcccagatgaggaggtg
gagaacaagaagaaagaagaaggagagaaggccatggaggaggagcaggtggagaataag
agctctgatgagaaagaaaagaaagctgagggggcggaaaagaaaaatgaagcaaaggag
aagacagatgatgagaaagggcttgccgttgccaagaaggaggtggttgaaaaggacacg
cgagagggagaagagagcccaaaaagtcaaacagcgaaaaaacagaaagaagcaaaagag
cagaaagataaggagccagccaagaaatcccccatcagcagtttctttgctcccaggaaa
gctgcagtgaagacggagaaaccagagaagaatgaaggggagaaaaagacaagtgcggag
aggaagagttcagcggaggagagtaaagacacaaaaggcgagccaacttcaggacaaaca
gactacaatccgtcccggccaggatatcatcccgtggaccacgcctgctggaagaagggc
caaaaagtgccgtacttggcggtggctcgcacctttgagaagattgaagaggactctggc
aggctgagaaacattgagacgctgtcgaacctgcttcgctctgtgctgctgctctctcca
gacgacctgctgtgctgtgtgtacctgtgtttgaaccagctgggtcctgcgtacctcggg
atggagcttggcgttggagaaacggtgctgatgaaagctgttgctcaagcaactgggcga
caattggacaaaatcaaagcagaggctcaggagaaaggagatttgggcctagtggccgag
agttcccgtagcaaccagcgcatgatgttccaaccggccagtctgacagcagggggcgtg
ttcaggaaattgaaggaaattgccagcatgagtggaaactcggccatgaataagaaaatc
gacatcatcaaaggcctctttgtggcatgccgcttttctgaggcccgctacttttccagg
tctcttgctgggaagctgaggataggcctggccgagcagagtgtcctatcagcactcagc
caggctgtgtgtttgaccccacctggacaaggtttccctcctgctgtgatcgacgcaggg
aaagggatgagcgctgagagcaggcgggcctggatcgaagagaagagtctcattctcaaa
cagacttactgcgagatgcccaattacgacgtcctcatccctgttctgctaaaagagggc
atagaccagctacccaatcactgcaagctcactccaggtgtaccgctgagacccatgttg
gctcaccccacaaagggtgtcggcgaggtgatgaagaagtttgacgaggcggcgttcacc
tgcgagtacaagtacgacggcgagcgtgcacagattcacattttggagagcggcgaggtt
cgaatattcagccgcaaccaggaagacaacaccagcaaataccccgatatcatctctcgc
attcccaaggtgaagaaggactcagtggtatcctgcgtcctggacacagaggctgtcgcc
tgggatcgtgagaagaaacagatccagcccttccaggtcctcaccactcgtaagagaaag
gacgtggatgccacggagatcaaagtgcaagtgtgcgtgtacgcctttgacctcctctat
ctcaatggcgagtccctggtgcgacagccgttgagtcggcgtcgggctctgctgaaagaa
agcttctcagaggtggagggagagtttatgttcgcccgatccattgactctgacaacaca
gacgccatcgctgagttcctggagcagtctgtccgagattcctgtgagggcctgatggtg
aagactctggagaaagatgccacctatgaaattgccaagcgctctcataactggctcaag
ctgaagaaagactacctggagggggtgggtgacacagtggacctgtgtgtgattggcgcc
tacatggggaaaggcaagaggacgggcacctatgggggcttcctgctggcgtgctatgat
gatgagaacgaggagttccagtccatctgcaagatcgggacaggcttcaaggatgaagat
ctggagcagcattacaagttcttaaaggaccacattctgccgaagccccgtgcctactac
cgcgtcgaccaatcagcagagcccgacatgtggctcgacgccgtgcaggtttgggaagtg
aagtgtgccgacctttcgctgtcacccatctacaaggctgccatgggaatggtggatcca
gagaagggcatttctctgaggttcccccgcttccttcggatcagagacgacaaaaaaccc
gaggacgctacgaccggagctcagattgcggatttgtacaagaagcagcagcagattcag
aatcagggggagaaagctgacccagaggactactactga
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