Seriola dumerili (greater amberjack): 111239528
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Entry
111239528 CDS
T05606
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111239528 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111239528 (pcf11)
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111239528 (pcf11)
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111239528 (pcf11)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111239528 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
111239528
NCBI-ProteinID:
XP_022625145
LinkDB
All DBs
Position
Unknown
AA seq
1628 aa
AA seq
DB search
MDCLLINGYGIDNAGVGFPVSLGSKMDDNAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPATEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSVDPAWPIKPLPPTVNASIHVNPK
FLKQSEEASSPQPAAPSQPAPAPAPAPAPAPAPAPAPAPTPVPPISQSSLTQEQLIRQQL
LAKQKQLLELQQKKIELELEQTKAQLAGGFVLPTLAPVLAPAAPSATPKPVAQTAPVVRP
RIPPQTQSDTKPSTRDPRLNRTGPPATSHPKEQPAGKKDNPPTTGGPVLTPEKRLAEKSA
RLDKTRIPRKEVSEEKPKSKSPSPMAKSVQSKNRQVEAELQKSADSTKKDPRLKKRTQDK
TGDAKDDELKEKKRCNDKKEREEVPQGAEPQRFNKGKLVNGSVTKHDRDESTEKVEFKTG
GNARTHARKRTRSRSRSRSPASSPKRKDRRSPKGRTRSSSLSPSPSHKPGKARRVRMDEP
PHGKPGREDRITPKKNQSESRRSKRPSEDRHAESRDSHSPRGHDGGKEAKEAPHRWRSGW
EENKHLKLSDESHLKPAPPRHKPYSTPTRPPTPRTPKHRLSVDANLQIPEVLNSASKKDL
LRRASKRLESGEISQEDFLNMAHQIKHFFQYQEEKQRTESWDDPDDFPSKKDPLLTTPPS
AQPRPHDSMDAAELSYYEHKSKLRKTQVTHRVAGEEWEGEERLEDSEEVGQGEKTGGGRS
SGHLPSHKHSRAPRDRQGERRSKEREEPRPPLAPMIEEYNHGKEFPTLKSLPGLRFRMRA
GPRESSEREWNSPLTERQRYDEREEQKSGYDAPRRYAPPTDSRHPDPRRPEGAPPSGTVV
HRNCPSPAGLEAPPPRFERERLSPLHQKDAAEMSPIPRFESPNSEHSDDGPLNLDVAPPH
PPPPPPPKSILKAPARGGPAVLRPTAQQLAGGHTPPHDGGHPPPRYDSNEHMGPPRPHPP
GWYDDSSRFDGPHHQGPGRFDGLSHGPMRGGDSMSRFDGHAHPQGPGRFDGPIGQQPPVR
FVGQGPGPGHFEGPMQHFEPPRRFENNMAPGPGPMGFQQQRPLRFEGPPNQMGPMRFEGP
SRFDGPGQPGPRYEVPNVPHQGGHPHFEGPPRQQGPPRFPPQHNLQPPMRPMAPPIYDNP
MAPQQNFTMAPQRFPESMNPQFPAAPMAFPAQPNLQAGNFNMQPAPPFSQPGPAPFYNPA
APAVGLQQPVNMLGNMNQPFLPQNPVPFTSQTPQVVPPENHFGQVDVNDLLSKLISNGII
KPSQPDAAPTVPGNETSPVAPAAPPVVVEEEEEEEQEVEEDDFPDLTSFSIDDMKQRYES
VVTRLYSGNQCCLCSMRFTTAQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSLTDWI
EFEEIADLEERAKSQFFEKENEEEVQKNQAAAKEKEFQSVRATKDQVGESCEICQEPFET
YWVEEEEDWFLKNAIRVDDKNFHPSCFEDYKNTSSYLDVTPSPNKVLTDHPLRVFIKTEE
EDEEEGTSCAVASAAASAAATAAASAAATAAATVKQEAESEAGELPPVKKEEEPEVLTDE
VQSEESKA
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgttgatcaatggttatggtattgataacgccggtgtaggtttccccgtg
tcgctcggctcaaagatggacgacaacgcggcgagggaagatgcctgccgagagtatcag
tcctcactggaagacctgacattcaacagcaagccgcacatcaacatgctgaccattctg
gccgaggaaaacctcaacttcgccaaggatatcgtcgcaattattgaagctcaaataagc
aaggccccagctaccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgaaaacactagaaagagtctgttcaagttgcgctccacgtgggac
gacgtgttccccctgaagaagctgtacgcgctggacgtccgggtcaactctgtggacccg
gcctggcccatcaagccgctgccgcccaccgtcaacgccagtattcacgtcaaccccaag
tttttaaaacagtctgaggaggcgtcctctccgcagccggccgccccctctcagccggcg
ccggctcctgcccctgctcctgctcctgcgcctgctccggcaccggcgcctgctcccacg
ccggtcccccccatcagccagtccagcctgacccaggagcagctgatccggcagcagctg
ctggccaaacagaagcagcttctggagcttcagcagaagaagatcgagctggagctggag
cagaccaaagctcagctggccggaggattcgtgttaccaactctggctccagtcttggct
ccggcggcaccgagcgccacgccgaagcccgtcgcccagaccgctcccgtggtccgaccc
cggatccctcctcagactcagtccgacaccaagccgtccaccagagacccccgtctgaac
cgcaccgggcccccagccacctcccaccccaaagaacagcctgctgggaaaaaagacaac
ccccccacaacaggaggtcccgttctgacgccagagaaacgactagcggagaagtccgcc
cggctggacaagaccaggatcccgaggaaagaggtctcagaggagaagcccaagtccaag
tccccgtctccgatggccaaaagtgtccagagcaagaacagacaggtggaggcggagctt
cagaagtcagctgacagcaccaagaaagatcccaggctgaagaaacgcacgcaagacaag
accggagacgccaaagacgatgagctgaaggagaaaaagagatgcaatgacaagaaggag
agagaggaggtgccgcagggggcggagcctcagaggttcaacaaagggaagctggtcaac
ggctcggtcaccaaacacgaccgtgacgagtccaccgagaaggtcgaattcaagaccggg
ggcaacgcccggacgcacgccaggaaacgcacccgctctcggtcaaggtcgcgctccccc
gcctcctccccgaagaggaaggacaggcggtcgcctaagggccggaccaggagcagctcg
ctgtccccgtcgccctcccacaaacccggcaaagccaggagggtccgcatggacgaaccg
ccgcacggcaagcccggccgagaggaccggatcacgcccaagaagaaccaatcagagagc
aggaggtccaagaggccgtcggaggaccggcacgccgagtccagagactctcactccccg
cgaggccacgacggaggcaaggaggcgaaggaggctcctcaccgctggaggagcggctgg
gaggagaacaagcatctgaagctgtcggacgagtctcacctgaagcccgcacctccgcga
cacaaaccctacagcacccccacccgcccccccaccccccgcaccccgaagcaccgcctc
agcgtagacgccaacctgcagatacctgaagtcctcaactccgcctccaagaaggacctg
ctcaggagggcctccaagcgtctggagagcggcgagatttcccaggaggacttcctgaac
atggcgcaccagatcaaacacttcttccagtaccaggaggagaagcagcgtacggagagc
tgggacgacccggacgacttcccctccaaaaaggacccgctgctgaccacgcccccctct
gcgcagccccgcccccacgacagcatggatgcggcggagctgtcgtactacgagcacaag
tccaagctgaggaagacgcaggtcacccaccgagtcgctggggaggagtgggagggcgag
gagcgactggaagacagcgaggaggtgggacaaggcgagaagacgggcggtgggcggagc
agcggacacctgccgtcacataaacacagccgggcgccacgggacagacaaggtgagaga
cggagtaaagaacgggaagagccgcggccgccgctcgcccccatgatcgaagagtacaac
cacggcaaagagttccccacgctgaagtctctgcccggccttcgcttcaggatgagagcc
ggcccccgagagtccagtgagagggagtggaactcgccgctgaccgagcggcagcgttac
gacgagcgtgaggagcagaagagcggatacgacgctccgcggaggtacgccccccccact
gactccagacaccctgaccctcggaggccagagggagccccgccctccggcacagtggtc
cacaggaactgtccgagcccggcgggtctggaagccccgcccccgcggttcgagcgggaa
cggctgtcgcctctgcaccagaaagacgcggcagagatgagtccgatcccgcgcttcgag
agccccaacagcgagcactccgacgacggccccctcaatcttgatgttgccccccctcac
cctccccctccccctccccccaaatccatcctgaaggcaccggcccgcggggggcccgct
gtcctccgtccgacagcacagcaactcgccgggggacacacgcctcctcacgacggagga
cacccgcccccccggtacgacagtaacgaacacatgggcccccccaggccacaccccccg
ggctggtacgacgactcatcgcgtttcgacgggcctcaccaccaggggcccggccggttc
gacggcctgtctcacggtccaatgagaggcggagacagtatgagcaggtttgacggccac
gcccaccctcagggtcccgggaggtttgacggccccatcggccaacagcccccggtgagg
tttgtgggacaggggcccggaccgggacactttgagggcccgatgcaacactttgaaccc
ccgcggcgctttgagaacaacatggctcctggtcctggtccgatgggcttccagcagcag
cggcccctgcgcttcgagggtcccccaaaccaaatgggccccatgaggttcgagggtccc
agtcgcttcgatggacccggacagccgggcccccgctacgaggtacccaatgtgccccac
cagggcgggcacccgcacttcgagggtccccccaggcagcagggcccccccaggttcccg
ccccaacacaacttgcagccccccatgaggccgatggccccgcccatttacgacaatccc
atggccccccagcagaacttcaccatggcccctcagcgtttcccagagtccatgaacccc
cagttcccggcggcgccaatggcgttcccggcacagccgaacctgcaggcgggaaacttc
aacatgcagccagccccgcccttcagccagcccggccccgcccccttctacaacccggct
gctcctgctgtcggcctgcagcagccggtgaacatgttggggaacatgaaccagccgttc
ctgcctcagaacccggtgcctttcacatcacagactccgcaggtcgtccctccagagaac
cacttcggtcaggttgacgtcaacgacctgctctccaaactcatctccaacggcatcatc
aaaccctcgcagcccgacgccgcgccgacagtgccgggcaacgaaacttctcccgtggct
ccagcggcgccaccggtggtggtggaggaggaggaagaggaggagcaggaggtggaggag
gacgatttcccggacctcaccagcttcagcatcgacgacatgaaacagcggtacgagagc
gtggtgacccggctgtactcggggaaccagtgctgtctgtgcagcatgaggttcaccacg
gctcagaccgacatgtacgctgaccacctggactggcacttcagacagaaccacgccgga
aaggtcgccagcaagaaggtcacacaccgccgctggtactacagcctgacggactggatt
gagttcgaggagatcgccgatctggaggagcgagcgaagagtcagttcttcgagaaggag
aacgaggaggaggtgcagaagaaccaggcggcggcgaaggagaaagagttccagagcgtg
agagcgaccaaggaccaagtgggggagtcgtgtgaaatctgtcaggagccgtttgagacg
tactgggtggaggaggaggaggactggttcctgaagaacgccatcagggtcgacgacaag
aactttcatccctcctgttttgaagattataagaatacatcgtcgtatctcgacgtcaca
ccgtcgcccaacaaggtgctcaccgatcacccgctgagagtcttcataaagactgaagaa
gaagatgaggaagagggaacttcctgcgccgtcgcctccgcagccgcctctgcagccgcc
accgcagccgcctccgcagccgccaccgcagccgccaccgtcaaacaggaggcggagtct
gaggccggcgagcttcctcctgtgaaaaaagaggaggagcctgaggttttaacagacgaa
gtgcaatcagaggagagtaaagcgtag
DBGET
integrated database retrieval system
