Sulfitobacter dubius: R1T39_01045
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Entry
R1T39_01045 CDS
T09506
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sdub
Sulfitobacter dubius
Pathway
sdub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R1T39_01045 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdub03400
]
R1T39_01045 (ligD)
Enzymes [BR:
sdub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R1T39_01045 (ligD)
DNA repair and recombination proteins [BR:
sdub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R1T39_01045 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WOI29327
LinkDB
All DBs
Position
complement(216031..218490)
Genome browser
AA seq
819 aa
AA seq
DB search
MAKSPDRLASYNAKRDFEATAEPRGQIGSGAGQSFVVQKHDATRLHYDFRLEWEGVLLSW
AVTKGPSPDPSEKRLAVRTEDHPLDYGGFEGTIPKGQYGGGTVMLWDRGTWMPQGDVAKG
LKDGKLKFTLQGQQMQGGWTLVRMRGGEKRENWLLIKERDDYARDQPDGLTKGTARSITT
GRTMAEIAKDAPAKKLADPSPKRKGKRPAFVKPQLATLVSDAPEGENWMHETKFDGYRCL
VSLGKGGARLYTRSGKDWTEKFNGLAHAFDALPCDRALLDGEVMAAKIKGSAFSSLQRAL
KEGHPLVFYAFDLLSLNGEDFRDTAQDDRRARLAKLLSGLPAGGPLRLSEHVVGHGPEVF
KRACEAGAEGIISKRIDAPYSGRRSKNWLKIKCTRRQEFVIIGYSPSDKKGRAFASLLLG
SQEGGELRYKGRVGTGFSEEMMNDLARAMTARKTPPARDVPPEVARDAKWVRADLVAEVD
FTEFTADGVIRHGSFLGLRHDKDATQVTVEEPQEEPQRADDSKVGGVQISNANRKVFPDA
GCTKGDVARHYERVGPRMIDLMGHRPLSLFRCPSGIDGQCFFQKHDSGGMPDALSRVSIE
ESDGDAADYLYATRPDSLIAAAQMGCIEYHIWGARVDRLDRPDRLVFDLDPDEGLDWPDV
RAAAFEVRDALTALGLQSGAIVTGGKGVHVWLALRRTRGWDTVKLFSKTFAHVMAAQNPD
RYVATMSKAKRKGRIFIDWLRNERGATAIAPYSLRARPGAPVAVPVTWEELEKLDSANGF
RVGDMAAQLDQPCPAMAVQNDLQALTDGVIEKLQTWSEG
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatcccccgacaggctcgccagctacaatgccaaacgcgatttcgaggcgacc
gcagaaccgcgcggccaaatcggcagtggtgcggggcagagtttcgtcgttcagaaacac
gatgccacccgcctgcactatgactttcgccttgaatgggaaggggtgctgctgagttgg
gcagtcaccaaaggcccctcgcccgacccctcggaaaagcgcctcgccgtgcggacagag
gatcatccgcttgactatggcggctttgaggggacgatccccaagggccaatatggcggc
ggcacggtgatgctttgggaccgtggcacttggatgccacagggcgatgtcgccaagggg
ctgaaagacggcaagctcaagttcacgctgcaaggccagcagatgcagggcggttggacg
ctggtgcggatgcggggcggcgaaaagcgggagaattggctgctgatcaaggagcgcgat
gactatgcccgagatcagcccgacggcctgaccaagggcaccgcccggtcgatcaccacg
ggtcgcaccatggccgagatcgccaaggacgcccccgcgaaaaaactggctgacccaagc
cccaaacgcaaaggcaaacgcccggccttcgtcaaaccacaactcgccaccctcgtcagc
gatgcgccagagggcgagaattggatgcatgaaaccaagttcgacggctaccgctgtctt
gtctccctcggcaagggcggtgcgcggctctacacccgctcaggcaaggattggaccgag
aagttcaacgggctggctcatgcttttgacgctctgccctgcgaccgtgccctcctagat
ggagaggtcatggcagccaagatcaaaggttcggcattctcatcgttgcagcgggcgctg
aaagaggggcatccgctggttttctacgccttcgatctgttgtcgcttaatggtgaggat
ttccgcgacacagcacaagacgaccgccgcgcacggctggccaaactgctttctggcctc
cccgcaggcggaccgctgcggctgagcgagcatgtggtcggccacggccccgaagtgttc
aaacgtgcctgtgaagccggagcggaagggatcatcagcaagcgcatcgacgcgccctac
tctggcagacgcagcaagaactggctcaagatcaaatgcacccggcggcaggagtttgtc
atcatcggctattccccttctgacaaaaaaggccgcgcctttgcttcactgctgctcggc
agccaagaggggggagagttgcgctacaaggggcgcgtcggcacggggttctccgaagag
atgatgaatgaccttgcccgcgccatgaccgcccgcaagaccccgcccgcgcgggacgtt
ccgcctgaagtcgcccgcgatgcgaaatgggtccgcgctgatctagtggcagaggtggat
ttcaccgagttcaccgccgacggcgtgatccggcacggcagttttctgggcctgcgccac
gataaggacgcgacccaagtgaccgtggaagaaccgcaagaggagccgcagagggccgat
gacagcaaggttggcggcgttcagatcagcaatgccaaccgcaaagttttcccggatgcg
ggctgcaccaagggcgatgtggcgcgacactacgagcgtgtcggtccgcgcatgattgac
ctcatgggccaccgtccgctgtcgctgttccgctgcccttcggggatcgacggacagtgc
ttctttcaaaagcacgacagcggcgggatgcccgatgcgctgtcgcgggtttcaatcgaa
gaaagcgacggcgacgcggcggactacctctatgccacacggcccgacagcctgatcgcg
gcggcgcagatgggctgcattgagtatcacatctggggcgcgcgggtggatcgcttggac
cgccctgaccggctggtctttgacctcgaccccgatgaggggctggattggcccgatgtg
cgcgctgcggctttcgaggtacgcgatgcgctgacggctctgggcctgcaatcgggggcc
atcgtcactggcggcaagggcgtgcatgtctggctggccttgcgccgaacacgcggctgg
gacacggtcaagcttttctcaaaaaccttcgcccatgtcatggccgcccaaaaccctgac
cgctatgtcgcgaccatgtccaaggccaagcgcaagggccgcattttcatcgactggttg
cgcaacgaacgcggcgccacggccatcgcgccctactctctccgcgcccgccccggcgcg
ccggtggccgtgccagtgacttgggaggaattagagaaactcgacagcgccaatggtttc
cgcgtgggcgatatggctgcgcagctggatcagccctgcccggcgatggcggtgcaaaac
gatctgcaagcgctgaccgatggggtgatcgagaaattgcagacatggtctgagggctaa
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