Sulfitobacter dubius: R1T39_03815
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Entry
R1T39_03815 CDS
T09506
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdub
Sulfitobacter dubius
Pathway
sdub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R1T39_03815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdub03400
]
R1T39_03815 (mfd)
Enzymes [BR:
sdub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R1T39_03815 (mfd)
DNA repair and recombination proteins [BR:
sdub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R1T39_03815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
RecG_dom3_C
AAA_30
SecA_DEAD
UB2H
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WOI29841
LinkDB
All DBs
Position
complement(764817..768293)
Genome browser
AA seq
1158 aa
AA seq
DB search
MNDPRNITLSGVPEGFDARAILDEIAKGGQPVAHVARDDKRMAAMQAALRFYAPDMPVFT
FPSWDCLPYDRVSPNADISAQRMATLAALVHGMPDQFVLLTTLNAASQRIPARDTLRDAA
FAARVGSRIDEKALREFLVRMGFVQSPTVMEPGDYAVRGGIIDIYPPGDLGPVRLDLFGD
VLDGARRFDPATQRTTEKLDLVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEA
ISAGRKHQGAEHWLSFFHDNLETLFDYLPKATITLDDQLTPMRLARWDTIADQYETRQLA
MKTRSKMDSVYKPAPPEGLYLTDDAWNEALIGKRVIQFNPLPQPTGPGVMDAGARIGRNF
SPERQQESVSLFGALAAHIKAKLEVGPVLVASYSEGARERLTGLIEDEGLAEAIPVTDAT
RIGKRGLHLAVWALEHGFEAPGMTVISEQDVLGDRLIRAPKRKRRAENFLTEAQSLSPGD
LVVHVDHGIGRYHGMEVVTAAGAAHECLVLEYAEQSKLYLPVENIELLSRYGHEEGLLDK
LGGGAWQSKKAKLKERIREMADKLIRIAAERALRKAPVLDPPPGMWDAFSARFPYSETDD
QLRAIGDVIDDLTSGNPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLARQ
HYKSFAERFRGFPIEVRQLSRFVSAKEATATRDGMAKGTVDIVIGTHALLAKGIRFKDLG
LLVIDEEQHFGVGHKERLKALRTDIHVLTLTATPIPRTLQLSLTGVRDLSVIGTPPVDRL
SIRTYVSEFDAVTIREALLREHYRGGQSFYVVPRVSDLREIEEFLKAQLPELTYVIAHGQ
LAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRGRVG
RSKTRAYAYLTTKPRAKLTDTAQKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGFELYQSMLEEAIAKIKAGEMEGLSEADEQWAPQINLGVPVLIPEDYVPDLDVR
LGLYRRLSELSTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKRAGIAKLDGGPK
GATIQFHNDKFASPEGLVQFIQDQRGLAKVKDNKIVVRRDWKSDADKIKGAFAIARDLAE
HVIAKEKTAKKAKAKAKG
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatccgcgcaatatcaccctctccggcgttcccgaaggctttgatgcccgcgcc
atccttgatgaaatcgccaaaggcggccagccggtggcccatgtggcgcgcgatgacaag
cgtatggccgcgatgcaggccgcgctgcgcttttatgcgcctgatatgccggtgttcacc
ttcccaagctgggattgcctgccctatgaccgtgtgtcgcccaatgcggatatctctgcg
cagcgcatggcgaccttggcggcactggtgcatgggatgccggatcagtttgttctgctg
accacgctgaacgcagccagccaacgcatccccgcgcgggacaccctgcgcgatgccgcc
ttcgcggcacgtgtcggcagccggattgacgaaaaagcgttgcgcgaatttttggtgcgt
atgggattcgtgcaaagccccacggtgatggagccgggcgactatgcggtgcggggcggg
atcatcgacatctacccgcccggcgatcttggcccggtgcggctcgatctctttggagat
gtgctggacggcgcacgccgctttgacccggcgacgcagcgcaccacggaaaagcttgat
ctggtggagctggccccggtcagcgaggtaatcctagacgaggcggcgatcacccgtttc
cggcagaactatcgcattgagttcggcgcggcgggcaccgatgatccactttatgaggca
atcagcgcgggccgcaaacatcaaggcgcggaacattggttgtcgtttttccacgacaat
ctcgaaacgctctttgactatctgccgaaagccacgataacgctggacgatcaactgacg
cccatgcgcctcgcgcggtgggacacgattgccgaccaatatgagacgcgtcaactggcg
atgaaaacgcgctccaaaatggacagcgtttataaacccgcgccgcccgaagggctatat
ctgaccgacgacgcttggaacgaggcgttgattgggaaacgggtaatccagttcaaccca
ttgccgcagcccactgggccgggcgtgatggacgcaggtgcgcggatcgggcgcaatttt
tcgcccgaacgtcagcaggaatctgtcagccttttcggtgctttggctgcgcatattaaa
gcaaagcttgaagtggggccggtgctggtcgccagctattccgaaggcgcacgcgaacgc
ctgacggggctgatagaagacgaagggttggccgaagcgatcccggtgacagatgccaca
cgcatcggtaaacgcgggctgcatctggccgtttgggcgttggagcacgggttcgaagcg
ccggggatgacggtgatttccgagcaagacgtgctgggcgaccgcctcatccgcgccccg
aaacgcaagcgccgggccgagaatttcctgaccgaagcgcaaagcctcagccccggcgat
ctggtggttcatgtggaccacggtatcgggcgctatcacggcatggaagtggtgacggca
gcgggcgcggcgcatgaatgtctcgtgctggaatatgctgagcaatcaaagctttatctg
cctgttgagaacatcgaactgctgtcgcgctatggccatgaagaagggctgctggacaag
ctcggcggtggggcgtggcagtcgaagaaggccaagcttaaggaacgtatccgcgagatg
gcggacaagctcatccgcatcgcggcagagcgggcgctgcgcaaggcccccgttctcgac
ccgccgccgggcatgtgggatgccttctcggcgcgcttcccctatagcgagaccgatgac
cagctgcgcgcaattggcgatgtgatcgacgacctgaccagcggcaacccgatggaccgt
ctggtctgtggcgacgtgggctttggcaagaccgaggtcgccatgcgtgcggcctttgtt
gcagccatgtccggtgtgcaggtcgccgtaatcgcgccgacgactctgctggcgcggcag
cactacaagagctttgccgaacgcttccgcggctttccgattgaagtgcgccagttgagc
cgtttcgtctcggctaaagaggcgacggcgacgcgggacgggatggctaaaggcaccgtc
gatatcgtcatcgggacccatgcgctgctcgcgaagggcatccggttcaaagaccttgga
ttgctggtgatcgacgaagagcagcattttggcgtgggtcacaaggagcggctcaaggcg
ctgcgcacggacattcacgtgttgaccctcaccgcgacgccgatcccgcgcacgctgcaa
ctgtcgctgaccggggtgcgcgatttgtcggtgatcggcacgccgcccgtcgaccgtctg
tcgatccgcacctatgtgagcgaattcgacgcggtgacgatccgagaggcgctgctgcgg
gagcattatcgcggcgggcagagtttctacgtggtgccgcgtgtgtcggacttgcgcgag
attgaggagttcctcaaggcgcaactgcctgaattaacctacgttattgcccatgggcaa
ttggcggcgggcgagttggatgaccggatgaacgccttttacgacggcaagttcgacatt
ctgctggccacgacaatcgttgaatccggcctcgatattcccaccgccaacacgatgatc
gtgcaccgggccgacatgttcgggctggcgcagctctaccagatcaggggccgtgtgggc
cgctcgaaaacccgcgcttatgcgtacctcacgaccaaaccgcgcgccaagctgacggat
accgcccaaaaacgtttgcgggtgttgggcagtctcgacacgctcggcgcgggctttacg
ctggcgtcgcaagaccttgatattcgcggggcgggcaacctgctgggcgaagagcaaagc
ggccagatgcgcgatgtaggctttgagctttaccagtcgatgctggaagaggcgattgcc
aagatcaaagccggcgagatggagggtctcagcgaggccgacgagcaatgggcgccgcag
atcaaccttggcgtgccggtgctgatccccgaagattatgtgcctgatctggatgtgcgc
ttgggcctttaccgccgtctcagcgagctgtcgaccaaggtggaacttgaaggttttgcc
gccgagttgatcgaccgtttcggcaagctgccgaaagaggtcaacacgctgatgctggtc
gtgcggatcaaggccatgtgcaaacgcgccgggatcgccaagctcgatggcgggccgaag
ggcgcgacgatccagttccacaacgacaagttcgcctcgcccgaggggctggtgcagttc
attcaggatcagcgcggtctggccaaggtcaaggacaacaagatcgttgtgcgccgcgat
tggaagtcggatgccgataagatcaagggtgcctttgccattgcacgtgaccttgctgaa
catgtgatcgccaaagagaaaaccgcaaagaaggcaaaggcaaaggcaaagggctaa
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