Solanum dulcamara (climbing nightshade): 129870324
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Entry
129870324 CDS
T09577
Name
(RefSeq) polygalacturonase At1g48100
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul00040
Pentose and glucuronate interconversions
sdul01100
Metabolic pathways
Module
sdul_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
129870324
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
129870324
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GFIT
Motif
Pfam:
Glyco_hydro_28
Retrotran_gag_3
Pectate_lyase_3
Beta_helix
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
129870324
NCBI-ProteinID:
XP_055801037
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Position
2:14485429..14506435
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AA seq
545 aa
AA seq
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MADNVAAEESGSENYALWSRSFSIRLVGRNKLGFVDEKLGSYLECLLAGGREEERKHYIF
QMKKNYRHFSLVFLFVLLLIFATAFSIISVDARKHHTKKSKIHHKHRKQQRNGGGNKAPN
CSNSPSPAPTPTPTPSHGFYPTQSPIFDILSFGAKGDGVTDDTKALEAAWEAACKVQGAT
LEIPSEFQFLINPITLQGPCMPNFVFQVDGIVLAPPKVGSWPKSSLFQWLNFKWMHNFTI
QGTGTLDGQGYNWWKLSQIDYFQVMKKSKSIPDMKPTVLRFYGSYNVTVRDIKIKNSPQC
HLKFDNSKRIKVNNITISAPESSPNTDGIHLQNTQDVEINHSNIGTGDDCISIQTGCSNI
HVHHMNCGPGHGISLGGLGKDKSVACVSDIIVENVNLQSTMYGARIKTWQGGLGSVKNIS
FSNIQVSDVKVPIMIDQYYCDKRMCKNQTGAVAISNVKFNQIIGTYSAKPIHLACSNSIP
CTDVDLIDIQLKPSTNYRGINQLGLCWNSYGKSQAPLLPSSMDYCVRRGSGFVRGISRSH
EHVCL
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcagataatgttgccgctgaagaatctggatcagagaactatgctctatggagtaga
tcatttagtattcgtttggtaggtcgaaataagctaggatttgtagatgagaaattaggg
agctacctagagtgtctgttggctggaggaagagaggaagagaggaaacattatatcttt
caaatgaagaaaaattataggcacttttctttagtatttctctttgttcttctacttatt
tttgccactgcattttccataatatcagttgatgcaaggaaacaccataccaagaagagc
aaaatacatcacaaacataggaaacaacagagaaatggaggtggaaataaagcaccaaat
tgttcaaactctccttctcctgccccaactccaactccaactccgtctcatggattttac
ccaacacaatcacccatttttgatatcttgtcctttggagccaaaggtgatggagttact
gatgataccaaggcacttgaagcagcctgggaagcagcttgcaaagtccaaggggctact
ctagagattccttctgaatttcaattcttaatcaatcccataacacttcaaggaccatgc
atgcctaactttgtttttcaggtagatggaatagttttggctcctccaaaagtagggtcc
tggccaaaatccagtttgtttcagtggttgaattttaagtggatgcacaactttaccatc
caaggtactggcacccttgatggccaaggctataactggtggaaactttctcaaattgat
tatttccaggtgatgaagaaatctaaaagcattcctgatatgaaaccgactgttttacgg
ttttatggtagctataatgtgacagtacgtgatatcaaaattaaaaacagtcctcaatgt
caccttaaatttgacaattctaaaagaataaaagtcaacaacattacgatttctgctcca
gaaagtagcccaaacactgatggaattcacctccaaaacacacaagatgttgagatcaat
cactccaatatagggacaggagatgattgcatatcaattcaaactggttgctccaatatt
catgtccatcacatgaattgtggtcctggacatggcataagcttgggaggactaggaaaa
gataaaagtgttgcgtgcgtttcagacatcattgttgagaacgtgaacttgcaaagcact
atgtatggtgcaaggattaagacatggcagggtggtcttggatcagtcaagaacatatca
ttttcaaacattcaagtatcagacgttaaggtaccaatcatgatagatcaatattactgt
gacaaacgtatgtgtaagaatcaaacaggagcagtagcaatatccaacgttaaattcaat
caaattattggaacttattcagccaaaccaattcatctagcttgcagtaattcaattcca
tgtacagacgttgatttaattgacattcaattaaaaccatcgacgaattatcgaggaatt
aatcaactgggattgtgttggaattcttacggaaaatcacaagcaccacttcttccttca
agtatggattattgtgttagaagaggaagtggatttgttagaggcatttcaagatctcat
gaacatgtttgcttgtga
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