Solanum dulcamara (climbing nightshade): 129873289
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Entry
129873289 CDS
T09577
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03022
Basal transcription factors
sdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129873289
09124 Replication and repair
03420 Nucleotide excision repair
129873289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129873289
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129873289
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129873289
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129873289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
129873289
NCBI-ProteinID:
XP_055804329
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All DBs
Position
11:48070780..48079610
Genome browser
AA seq
453 aa
AA seq
DB search
MPQVKIVARNFMDMVASLPVMKLDMLYDNSFICEAILRSLPPLAKKYVLQLLYIDIPISA
KSMEEWVLPDGFSKHKVAIDRLIQLRVMTETFDRKKEATYQLNPKFQYNLQKHIVHGGVL
PREPMPSNITVRLPSLEELEAYAVEQWECFLLHLISSSEAGKGTNISSSMMKIFQRGLLS
QRDDREPPRLTESGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTG
KAYNTNTITDLQRSIIKDLSDLGLVKLQQGRKESWFIPTKLATNLSISLADTTSRKQGFI
VIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAINKESLYKAFQNGITSEQIIYF
LQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMTPAHFYDEFPSKDVFEAACDFARE
YGGLLWEDSKRMRLVVKADILTEMKDFLRRQKQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagtgaagatcgtggccaggaatttcatggacatggtggcttcattgcctgta
atgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgtta
cctcccttagcgaagaagtatgtgctgcaattgttgtatatagacatacccatttcagcc
aagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgat
agattgatacagttgagagtaatgacagaaacatttgacaggaaaaaggaagccacttat
caactaaacccaaaatttcaatataatcttcagaagcatatagtccacggtggagtctta
ccaagggaaccaatgccttctaatatcaccgtgaggcttcctagcttggaggagttagag
gcttatgccgttgaacagtgggagtgctttctactgcaccttataagctccagtgaagct
ggaaagggcacaaacataagctcttcgatgatgaaaatcttccagcgtggacttttaagt
cagagagatgatagagaacctccaaggttgactgaaagtgggttccagttcttgctaatg
gacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcga
ggtgtggattcggcagatcttattgcatttcttttggagctaagctttcatgttactggc
aaggcatacaacacaaacacaataactgatctccagcgaagtataattaaggacctttca
gatttgggactggttaagctgcagcagggaaggaaagagagttggtttattcccaccaaa
ttggcgaccaacctgtcaattagcttagcagatacaacatcaaggaaacagggatttatt
gttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatc
ctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaac
aaagaaagtttgtataaagcttttcaaaacggcattacttctgagcagataatttatttc
cttcagcagaatgcacatcctagggttgcagagaggataccatctgtgccggagaatgtt
actgatcagattagattgtgggaatctgatctgaatcgggttgagatgacgccagcccac
ttctacgatgaattcccttccaaagatgtctttgaggctgcatgtgattttgccagagaa
tatggaggattactgtgggaggattctaagcgaatgcgtctcgtagttaaagctgatatt
ttgactgagatgaaggactttcttcgtcgtcaaaagcaataa
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