Solanum dulcamara (climbing nightshade): 129885362
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Entry
129885362 CDS
T09577
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129885362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129885362
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129885362
Spliceosome [BR:
sdul03041
]
Complex C
Other components
Step II factors
129885362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
AAA_16
TsaE
ABC_tran
Sigma54_activ_2
T2SSE
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
129885362
NCBI-ProteinID:
XP_055815586
LinkDB
All DBs
Position
4:complement(1456307..1460094)
Genome browser
AA seq
1173 aa
AA seq
DB search
MVAEIEESELKKLEYLSLISKVCSELEAHLGFGDKVLAEFITELGRNCLTVDEFDDKLKE
SGAEMPDYFVRTLLTIIHAILPPTAMSKSDKELNKDGNDSEFSALKIRDNRERVKELEKE
IELEAKSKSRDWEEEEERDRRRQRDRDYRRERGRDRDRGRDRDRGDGRAEYRALERRRDR
DKDGDVYAKGKRDDYEQEGDDDRRDRRKSRHHVDEPELYAVYKGRVSRVMDSGCFVQLND
FRGKEGLVHVSQLATRRVSNAKDLVKRDQEVFVKVISISGQKLSLSMRDVDQNTGKDLLP
LKKSSGDDELTTNPSGMNNEGSKTRIGLSGIRITEQEDVVPSRRPLKRMSSPEKWEAKQL
IAAGVLGVQEHPMFDEEGDGMLYQEEGGVEEELEVELNEDEPPFLQGQSRYSVDMSPVKI
FKNPEGSLSRAAALQSALIKERREVREQQQRSMLDSIPKDLNRPWEDPMPETGERHLAQE
LRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSLQEQRQSLPIYKLKKELIQAVHDNQVLV
VIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEVGYA
IRFEDCTGPETVIKYMTDGMLWREILIDDNLSQYSVIMLDEAHERTVNTDVLFGLLKQLM
KRRPDLRLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEILYTKQPESDYLDASLITVM
QIHLTEPEGDILLFLTGQEEIDYACQCLYERMKGLGKNVPELIILPVYSALPSEMQSRIF
DPAPPGKRKVVVATNIAEASLTIDGIYYVIDPGFAKQNVYNPKQGLDSLVITPISQASAK
QRAGRAGRTGPGKCYRLYTESAFHSEMSPTAIPEIQRINLGNTVIMMKAMGINDLLSFDF
MDPPSPQALISAMEQLYTLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDFGCSDEI
LTIIAMIQTGNVFYRPREKQAQADQKKAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFEN
FVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIQKAIGAGFFFHAARKDPQEGYR
TLVENQPVYIHPSSALFQRQPDWVFYHELVMTTKEYMREVTVVDPKWLVELAPRFFKTAD
PTKLTKRKRQERIEPLYDRYNEPNSWRLSKRRA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggtggccgaaattgaagaaagcgagttgaagaaattggaatacctctctctaatttct
aaggtatgttctgaattggaagcacatttagggtttggtgataaggttttagctgaattt
ataactgaacttggtagaaattgcttaacagtagatgaatttgatgacaaattgaaagaa
agtggtgctgaaatgccagattatttcgtaagaacattgctcactataatccatgctatt
ttgcctcctactgccatgtccaagtcggacaaggagttgaacaaggatggcaatgactcc
gagttttcagctctgaagatcagagataatagggaaagggttaaggaattggagaaggag
attgagttggaggccaagagtaagagtagagattgggaggaagaagaagaacgggatagg
aggcgacagagggatagagattatagaagagaaaggggtagagacagggataggggaagg
gatcgagataggggtgatggcagagctgaatatagggctttagaaaggcgcagagacagg
gataaagatggagatgtatatgcaaagggtaagagagatgattatgagcaagaaggagat
gatgatcggagggataggagaaaatccaggcatcatgtggatgagccagagttgtatgca
gtatataaggggagggtatcaagggtgatggattctggttgttttgttcagctgaatgat
tttagagggaaagaaggcttggtgcatgtttcacaacttgctactagaagggttagtaat
gccaaagatttagtaaaacgggaccaggaggtttttgtgaaggttatctctattagtggg
cagaaactgagtttgtcaatgagagatgttgatcagaatacaggaaaggatctgcttcca
ttgaagaagagctcaggagatgatgagttgacaacaaatccttcaggcatgaataatgag
ggctctaagaccaggattggcctgtcaggaatcaggattacggagcaagaggatgttgtt
ccatcacgtagaccactgaagaggatgagttctcctgaaaagtgggaagcgaaacaactt
attgctgcaggtgtcctgggagtgcaggaacatcccatgtttgatgaagaaggggatgga
atgctatatcaggaagaaggtggtgttgaagaagagcttgaggttgaattgaatgaagat
gaaccccctttcttgcaagggcagagtcgttattcagttgatatgtcccctgtcaaaatt
tttaaaaatcccgaaggatcattgagtcgtgctgctgcactacaatcagctttgataaag
gaaagaagggaagtaagggagcagcaacagagatcgatgcttgattctataccaaaggat
ctcaacagaccatgggaagacccaatgccagagacaggtgagaggcatttggcacaggag
ctgaggggtgttggtttgtctgcctatgacatgccagaatggaagaaagatgcttatggt
aaagccttgacctttggccagaggtctaagctatccctccaggagcagaggcagagtctt
cctatttacaagttgaagaaagaactgattcaggctgtccatgataaccaggtcctggtc
gtcattggtgagacaggttctggcaagacaacacaggtgacgcagtatctagccgaggca
ggatatacaacgaggggaaaaattggctgtactcaacctcgtcgagttgctgcgacgtca
gtcgctaagagagttgctgaggagtttggttgtcgattaggtgaagaggttggttatgct
attcgttttgaagattgtactgggccagaaactgttatcaagtatatgactgatggtatg
ctttggagagagatcctgatcgatgataatttgtcccagtattcagtcataatgcttgat
gaagcacatgaaagaacggttaacactgatgttctctttggtttgcttaagcagcttatg
aagaggagacctgaccttcgtctaattgtcacatctgcaactttggatgcagagaaattt
tctggttatttctttgactgcaacatctttactatcccaggaagaacttttccagtagaa
atactctacacaaagcagccagaaagtgattaccttgatgcgtctttaattactgttatg
cagatccacttgacagaacctgaaggtgatatcctcctcttcttgactggtcaagaggag
attgattatgcttgccagtgtctctacgagaggatgaaaggactaggtaaaaatgttcct
gaactgatcatactacctgtctatagtgccttgcccagtgaaatgcagtccagaattttt
gatcctgcccctcctggtaaaagaaaagttgttgttgctacaaatattgctgaagcttct
ttgacaattgacggtatatattatgttattgatcctggatttgcaaagcaaaatgtctac
aatccaaaacagggtcttgattcacttgttattaccccaatttcacaagcatcagcaaag
caacgagcagggcgtgctggaagaactggacctgggaagtgctaccgtctgtatactgag
agtgcattccacagtgaaatgtctcctactgcaattccagaaatccagaggataaatctt
gggaacaccgttattatgatgaaagcaatgggtattaatgatcttttatcctttgatttc
atggacccaccttctcctcaggctctcatatctgccatggagcaactttacactcttgga
gccctggatgaagaggggcttctgacgaaactgggaagaaaaatggcagaatttccatta
gatcctcctttgtccaagatgcttcttgctagtgtggactttggctgtagtgatgagatc
ttgaccatcattgctatgattcaaactggaaacgtcttttaccgaccaagggaaaaacaa
gctcaggccgatcagaaaaaggccaaattttttcagcccgagggtgatcatcttaccttg
cttgctgtttatgaggcttggaaagcgaaaaacttttcaggtccatggtgttttgaaaat
tttgtccagtcacgatcacttaggagggcacaggatgttagaaaacagttgctctccatc
atggacaagtataaattggatgttgtgagtgccggaaagaatttcacaaagatccagaag
gctattggagcaggtttcttttttcatgctgctagaaaggatcctcaagagggttataga
actttagtagagaaccagccagtttacatccatcctagcagtgctcttttccaaagacag
ccggactgggttttttatcacgagcttgttatgacaacaaaggaatacatgcgcgaggtg
actgtggtagatcctaaatggcttgttgagttggcaccaagattcttcaagacggctgac
cccacaaaactaaccaagcgcaagagacaggaacgtattgagccactttatgatagatat
aacgagccaaactcatggcgattgagtaaacgacgagcgtga
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