Solanum dulcamara (climbing nightshade): 129899063
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Entry
129899063 CDS
T09577
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
129899063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129899063
Membrane trafficking [BR:
sdul04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
129899063
Hops complex
129899063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
VPS11_C
zf-C3H2C3
zf-C3HC4_2
zf-ANAPC11
zf-rbx1
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
129899063
NCBI-ProteinID:
XP_055829818
LinkDB
All DBs
Position
8:complement(67118101..67123888)
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AA seq
954 aa
AA seq
DB search
MYQWRKFEFFEEKFSGKVPDDIAGKIQCCSSGKGRIVLGCDDGTASLLDRGLKFNYGFQA
HSSSVLFLQQLKQRNFLVTVGEDEQIASQPPAVCLKIFDLDKMEPEGTSTSSPDCIQILR
IFTNQFPEAKITSFLVLEEAPPLLLIVIGLDNGSIYCIQGDIARERIKRFKLQVDNHSEK
SQSSITGLGFRVDGQVLQLFAVTPNTVNLFNMHTQAPTRQTLDQIGSSVTSVAMTDRSEF
IIGRPEAIFFYEVDGRGPCLAFEGEKKFLGWFRGYLLCVFADQRTGKNTFNVYDLKNRLI
AHSIVVNEVSQMLCEWGNIILILEDKSFLCIGEKDMESKLDMLFKKNLYTVAINLVQSQQ
ADAAATAEVLRKYGDHLYSKQDFDEAMTQYIHTIEHLEPSYVIQKFLDAQRIHNLTNYLE
KLHEKGLASKDHTTLLLNCYTKLKDVEKLNEFIKSEEGVGEQKFDVETAIRVCRAANYHE
HAMFVAKKAGRHEWYLKILLEDLGRYEEALQYISSLELSQAGVTVKEYGKILIEHKPAET
VDILMRLCTEESELPKKLASSGAFISMLPSPIDFLNIFVHYPHALLEFLEKYTSKVKDSS
AQVEIHNTLLELYLSHDLDFPSVSQSNMDEGGNDLAHKSSKKVSNGKVILEKKDANDEKG
RQERRRKGLTLLKSAWPSELEQPLYDVDLAIILCEMNDFKEGLLFLYEKMKLFKEVIACY
MQVHDHEGLIACCKRLGDLGKGGDPSLWADLLKYFGELGEDCSKEVKEILTYIERDDILP
PIVVLQTLAKNPCLTLSVIKDYIARKLEHESQLIEEDRRAMEKYQEESSTMRKEIQDLRT
NARIFQLSKCTACTFTLDLPAVHFMCMHSFHQHCLGDNEKECPECAPEYRAVLETKRSLE
QSSKNPDQFFQQVKSSKDGFSVIADYFGKGIISKTSNGPSEAIRSTSASSDNDF
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaatggaggaagtttgaattctttgaggagaaattttctgggaaagttccagat
gatattgccggcaagatccaatgttgttccagcggtaaaggaaggattgttttgggttgt
gatgacggcactgcttcgttattggatcgaggattgaagttcaattatggtttccaagct
cattcttcatctgtcctcttcctccaacagctcaagcaaaggaacttcttagtgactgtt
ggagaagatgagcaaatagcttcccaacccccagctgtttgtcttaaaatttttgatctt
gacaagatggagcccgagggaactagtacatcaagtccagattgtattcaaatactgcga
atatttaccaaccagttccctgaagcaaagatcacatcgtttttggttctggaagaggct
ccgccattgttactcatagttatagggctggacaatggttccatctattgcattcaagga
gatatagcccgtgaacgcatcaagcgctttaagcttcaggtggataatcattcagagaaa
agccaatcctccattacgggtctggggttcagagtggatggtcaggtgcttcagctgttt
gctgttactccaaatacagtgaacttgttcaacatgcatactcaagcacctactcggcag
actcttgatcagattggatctagtgtaactagtgttgccatgactgatcgatcggaattc
attattggtcggcctgaggcgatatttttctatgaagttgatggtcgtggtccttgtttg
gcctttgaaggagagaagaaattcctagggtggtttcgtggatatctgttatgtgttttt
gcagatcaaagaactggaaagaacactttcaatgtttatgatctgaagaaccggttaatt
gcccacagtatagtggttaatgaagtttctcagatgctttgtgaatggggtaacataata
cttattttggaggacaaatcatttttatgcattggggagaaagatatggagagcaaattg
gatatgcttttcaagaagaacctttatacagttgctataaatctcgtccaaagccagcaa
gctgatgccgctgcaactgctgaagtgctgaggaaatatggggatcacttgtacagtaaa
caagactttgatgaggctatgactcagtatatacacaccattgagcatctagaaccttct
tatgtcatacaaaaatttttggatgcacagagaatccacaatctcaccaattacttggaa
aagttgcacgagaaggggcttgcctcaaaagatcataccactcttttattaaattgttac
accaaattaaaagatgttgagaagctgaatgagttcatcaaaagtgaggaaggagttggg
gaacaaaagtttgatgttgaaactgcaataagggtatgcagagctgccaattatcatgag
catgccatgtttgttgctaagaaagctgggaggcatgaatggtaccttaaaattttactt
gaagatctaggcagatatgaagaagctttacaatatatcagcagccttgagttgagtcaa
gctggggtgacagtgaaagagtacggcaaaattctaattgagcataagccagctgaaaca
gttgatatactcatgaggctttgcacagaggaatccgaactgcccaagaagctagcatca
agtggtgcatttatctccatgttgccttctcctattgattttctcaacatttttgtccat
tatcctcatgctcttctggagttccttgaaaaatataccagcaaagtgaaggattcatct
gctcaagtggaaattcataacacactcctcgaattgtacttgtcccatgacctggatttc
ccatcagtttcacaatctaacatggatgaaggtggaaatgatctagcacataaatcttca
aaaaaagtatctaatgggaaggtgatattggaaaagaaagacgcaaatgatgagaaaggt
cgtcaagagcggcgtcggaaagggctgaccttgcttaagagcgcatggccttctgaacta
gaacaaccactatatgatgttgatcttgccataattttatgcgagatgaacgactttaaa
gaaggattgttgtttctttatgagaagatgaaacttttcaaagaagttattgcgtgttac
atgcaggtacatgatcatgaaggtttgattgcatgctgcaagagattgggtgatttgggt
aaggggggtgacccttctctttgggcagatttgttgaagtattttggtgaacttggcgaa
gactgctcaaaagaagtcaaagaaatcttgacttacattgagagggatgatatcttgcct
cccattgtggttcttcagacacttgccaaaaacccgtgcctcaccctctctgttatcaaa
gattacatagctcgaaagttagaacatgagtcacaactgattgaagaagaccgcagagct
atggaaaagtatcaggaagaatcatcaacaatgagaaaagagatccaagatctaagaaca
aatgctagaatttttcagcttagcaagtgtactgcttgcacattcacacttgaccttcct
gctgtccacttcatgtgtatgcactcatttcatcagcactgtcttggcgacaatgagaaa
gagtgccctgagtgtgctcccgagtacagagctgttctggaaacaaagaggagcttggaa
caaagttccaaaaacccagaccagttcttccaacaggtcaagagctcaaaggatggattt
tctgtaattgctgattattttggcaaggggattatcagcaaaacgagcaatggaccttct
gaagctattagatcaaccagtgcttcttccgacaacgatttctag
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