Solanum dulcamara (climbing nightshade): 129899708
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Entry
129899708 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 35
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129899708
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129899708
Spliceosome [BR:
sdul03041
]
Complex C
Other components
Complex C specific factors
129899708
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
SecA_DEAD
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
129899708
NCBI-ProteinID:
XP_055830713
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All DBs
Position
8:complement(69656067..69659340)
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AA seq
595 aa
AA seq
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MADHLNMEIEEEDDYVEYIPVAKRRAIEAQKILQRKGKSEAFEEEEEKIKLVEAKPSLLV
KASQLKKEQPEISHAEQVFQQEKEMIEHLSDKKTLMSVRELAKGITYTEPLRTGWKPPLA
IRRKSKKACDAIRKQWHIIVEGDDITPPIKNFNDMRFPEPILKKLRAKGIIQPTPIQVQG
LPVILSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEIMMPIAPGEGPFGLIICPSRELAR
QTYEVIEQFIEPLRENGYPELRPLLCIGGVDMKSQVDVVKRGVHIVVATPGRLKDLLAKK
KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARNALV
KPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLVFCENKADVDDIHEY
LLLKGVEAVAVHGGKDQEEREYAIAAFKACKKDVLVATDVASKGLDFPDIQHVINYDMPA
EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMD
DVDAITDASGVKGCAYCGGLGHRIRDCPKLDHQRSQQIANSRRDYFGSGGYRGEI
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccacttaaatatggagattgaagaggaggatgattacgttgagtatatacca
gttgcaaagcgcagggcaattgaggcgcaaaagatcctccagcgcaagggcaaatctgaa
gcatttgaagaggaagaggagaaaataaagcttgttgaagctaagccgagtttacttgtg
aaggcatctcagctcaagaaagagcaacctgagataagtcatgctgaacaagtgtttcag
caagagaaagagatgattgagcatttatctgataagaagacgttgatgtctgttcgggaa
ctagccaagggcattacttatacagagcctttgcgtacagggtggaagccacccttagcg
atcagacggaagtcaaagaaagcttgtgatgccattcgaaaacagtggcatatcattgtg
gaaggggatgatattaccccaccaatcaagaacttcaatgacatgaggttccctgaacca
attctgaagaaactcagagcaaagggtattattcagccaactccaatccaagtgcagggg
cttccagtcattttatctggtcgggatatgataggtatagctttcacaggttcaggtaag
acattagtttttgtgttgccgcttatcatggtggcattgcaagaagaaattatgatgcct
attgctcctggggaaggaccatttggcttgattatttgtccttctagagaacttgccaga
cagacatatgaagttatagaacagtttatagaacctctgagggagaatggttatccggaa
ttgaggcctttgctatgtattggtggagttgatatgaagtcccaagttgatgttgtgaag
aggggagttcatattgttgttgctactcctggaagactgaaagatctgctagcgaagaag
aaaatgaaccttgacaactgcagatacttgacgctagatgaggcagacagactagtagat
cttggttttgaagatgatattagggaggtatttgatcatttcaaagctcaaagacaaact
cttctgttttctgctacaatgcccacaaagatccaaaactttgcaagaaatgcactagtt
aaaccagtaattgtgaatgtgggcagggctggagcagccaatttagatgtgattcaggaa
gtggagtatgtgaagcaggaggccaagattgtttaccttcttgaatgcttgcaaaaaaca
ccacctcctgttttggttttctgtgagaataaggctgatgtggatgatatccatgagtat
ttgctcttaaaaggagttgaagctgtggctgttcatggaggcaaggatcaagaagagaga
gaatatgcaattgcagctttcaaagcatgcaagaaagatgttttagttgccactgacgtt
gcctcaaaggggctggattttcctgatattcaacatgtgattaactatgatatgcctgct
gaaattgaaaactatgtccacaggattggacgaacaggacgatgtggaaaaacaggaatt
gccaccacatttattaacaagaaccagagcgaaacaactctgcttgatctaaagcacttg
ctgcaagaagcaaagcagagaatccctccagtccttgcagagctcaatgatcccatggat
gacgtagatgccatcacagatgcaagtggagtaaagggttgtgcatattgtggtgggctt
ggtcatcgtatccgggactgtcccaaactggaccaccaaagaagccaacaaattgcaaat
tcaaggagggactactttggatctggaggttatcgtggagaaatttga
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