Solanum dulcamara (climbing nightshade): 129902391
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Entry
129902391 CDS
T09577
Name
(RefSeq) general transcription factor IIH subunit 2-like isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03022
Basal transcription factors
sdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129902391
09124 Replication and repair
03420 Nucleotide excision repair
129902391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129902391
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129902391
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129902391
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129902391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
DUF3173
Motif
Other DBs
NCBI-GeneID:
129902391
NCBI-ProteinID:
XP_055833593
LinkDB
All DBs
Position
1:complement(14197417..14226781)
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AA seq
508 aa
AA seq
DB search
MTASSSSLLGSSRIGSRPTIPGLYSDSLNPTSISFSSNLRGLSLKSHQMTASSSSLWGSS
RIASRPTIAGLHSDSLNPRSISFSSNLRGLPLKEMNNEEKRFNQEEEDEEENGRGREAWE
RTYADERSWESLQEDESGLLRPIDNKTLSHAQYRRRLRTATAARIQKGLIRYLYIIIDFS
RAAAEMDYKPSRMVVVARQVEAFIREFFDQNPLSQIGLVILKDGVAHCLTDLGGSPEAHI
KALMGKLGTSGDASLQNGLDLVCDLLNQIPSYGHREVLILYSALSTCDPGDILETIQKCK
AFKIRCSVIGLSAELYICKHLCQETGGMYFVALDELHLKELVLEHAPPPPAIAEFAVANL
IKMGFPQRTAEGVISICSCHKEAKVGGGYTCPRCKARICELPTECCICGLTLVSSPHLAR
SYHHLFPIRPFDDISPSVLKDLHKLPNNCFGCQLSLLNPGNLPGSQVACPNCKQHFCLDC
DIYIHESLHNCPGCESLRNSKTISDMEG
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgactgcttcttcttcttctctactgggttcatcaagaattggttcaagacccaccatt
cctggactttattctgattcactcaaccccacatcaatctctttctcatctaacctccgt
ggtctctctctcaaatcccaccaaatgactgcatcttcttcttctctatggggttcatca
agaattgcttcaagacccaccattgctggacttcattcggattcactgaaccccagatca
atctctttctcttctaacctccgcggtctccctctcaaggaaatgaacaatgaagaaaaa
cgatttaatcaagaagaggaggatgaggaggaaaatgggagaggtcgagaagcatgggaa
agaacttatgcagatgaaagatcatgggagtctttgcaagaggatgaatcaggactcctt
cgtccaattgacaacaaaactctatcccatgctcagtatcgacgacgtctccgcactgca
actgctgcgcgaattcagaagggtctgattcggtacctctacattatcattgatttctcc
agggctgctgcagaaatggattataaaccaagccgaatggttgtagttgctaggcaagtg
gaggcttttataagagaattttttgaccagaatcccctgagtcaaattggcttggtgatc
ttgaaagatggagtagctcattgcttaacagatcttggtggcagtcctgaggctcatatc
aaagcattgatgggtaaattggggacctcaggtgatgcatcccttcagaatggcctagat
cttgtgtgtgatctcctaaatcaaattccatcttatggtcatcgtgaagtccttatcttg
tattcagctcttagcacatgtgatccgggggatatactggaaaccatccaaaaatgcaaa
gcgtttaagataaggtgctcagtaattggtctctctgcagaactctacatatgcaagcat
ctctgccaagagactggtggaatgtattttgttgcattggatgagcttcatttaaaagag
ttagtattggagcatgctccacctcctccagctattgcagagttcgctgttgcaaatttg
atcaagatggggttcccccaaagaacagcagagggtgtcatttcaatttgttcatgccat
aaagaggctaaagttggtggtggatacacttgtccgagatgcaaagcacgcatatgtgag
ctgcctactgagtgttgcatctgcggactgacccttgtatcttctccacatttggcaagg
tcatatcatcatctcttcccaataaggccatttgatgacatttcaccctccgttctgaaa
gatcttcacaagttaccaaacaattgctttggttgccaactgagtcttctaaatcctgga
aatttgccaggttcacaggttgcttgtccaaactgcaagcaacacttctgccttgactgt
gatatttatatacatgagagcttgcacaattgtccaggttgtgagagcttaaggaattcc
aagaccattagtgatatggaaggatga
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