KEGG   Solanum dulcamara (climbing nightshade): 129902735
Entry
129902735         CDS       T09577                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03030  DNA replication
sdul03410  Base excision repair
sdul03420  Nucleotide excision repair
sdul03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    129902735
   03410 Base excision repair
    129902735
   03420 Nucleotide excision repair
    129902735
   03430 Mismatch repair
    129902735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdul03032]
    129902735
   03400 DNA repair and recombination proteins [BR:sdul03400]
    129902735
Enzymes [BR:sdul01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     129902735
    6.5.1.6  DNA ligase (ATP or NAD+)
     129902735
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     129902735
DNA replication proteins [BR:sdul03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    129902735
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     129902735
DNA repair and recombination proteins [BR:sdul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     129902735
   NER (nucleotide excision repair)
    Other NER factors
     129902735
   MMR (mismatch excision repair)
    Other MMR factors
     129902735
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 129902735
NCBI-ProteinID: XP_055834086
LinkDB
Position
9:complement(75076104..75086779)
AA seq 826 aa
MLSLSSYRFTQPTILYNFSLKPSSIFLLFSKKKQFPLKPLFFSANPNSRTMSDSPPPPRS
AFAVLMANSKKKTTSSPKKRKTPDVETSSKTPVDNQGSVLKPIKDIHLVNESKSEEVVVK
KPNQDSVLKPIEDTHLVNESKSEELVVEKRNEDSVLKPIEDTHLVNESKSEELVVKKRKM
ISPDESIEEMKKKAANFDPRKAVYWGDGERVPFMFVVKAFDAISKESGRIVITEIVTNML
RTVIETTPEDLLPVVYLAANKIAAAHDGMELGIGDASIIKALAEACGAKEAHIKKQYKEL
GDLGLVAKVSRSSQPLMHKPEALTVAKVFDTFRIIAKESGKDSQEKKKNYIKSLLVAATD
CEPQYLIRLLQTKLRIGLAEQTLLVAIAHAFVYSDNHSSPPAGVDSPLEEAAKIVKQVYS
VIPVYEKIVPALLADGVWKLSETCSFSPGVPVGPMLAKPTKGVSEILDKFQDMEFTCEYK
YDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVAAISRLKKSSATSFVLDCELVAYDRE
KQKILPFQVLSTRARKNVVISEIKVNVCIYAFDILYLNGQPLLQEQLNVRREHLYKSFEE
EPGYFQFATAVASNDLEEITKFLEDAVNASCEGLIIKTLSKDATYEPSKRSNNWLKLKKD
YMESIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDCNNEEFQSICKIGTGFSEAMLEER
SSSLRSKVIAKPKSYYRYAETINPDVWFEPTEVWEVKAADLTISPVHRAAQGIVDPGKGI
SLRFPRLMRVREDKNPEEASSAEMIADMYNAQKHNNKNNQDDNDED
NT seq 2481 nt   +upstreamnt  +downstreamnt
atgttgtctttgagctcatatcgtttcactcaacccactattctttacaatttctccctt
aaaccctcttcaatttttcttcttttctccaagaagaaacagttccctcttaaacccctt
ttcttctctgcaaaccctaattcaagaaccatgtctgattctcctcctcctcctcgctct
gcgtttgctgtccttatggccaattccaagaagaaaacaacctcctcacccaagaaacgt
aaaacgccagatgttgaaacttcaagtaaaacccctgttgataatcaaggttcagttttg
aagccaattaaggacatccatttggtcaatgagtcgaaaagtgaggaggtggtggtgaag
aaaccaaatcaagattcagttttgaagccaattgaggacacccatttggtcaatgagtcg
aaaagtgaggagttggtggtggagaaacggaatgaagattcagttttgaagccaattgag
gacacccatttggttaatgagtcgaaaagtgaggagttggtggtgaagaaacggaaaatg
ataagtccagatgagagcattgaggaaatgaagaaaaaagctgcgaattttgatccaaga
aaggcagtatattggggggatggtgagagagtgccgttcatgtttgtagttaaggcgttt
gatgcgatttcgaaggagtcagggaggattgtgattactgaaattgtgactaatatgttg
aggactgtgattgagacgacgcctgaggatttgttgcctgttgtttaccttgctgctaac
aagattgcagctgcacacgatggtatggagcttggtattggtgatgcttccattatcaag
gcacttgctgaagcttgtggcgctaaagaggcacatatcaagaagcaatacaaggagctt
ggagatttgggccttgttgcaaaagtaagtcgttcatcacagcctctgatgcataaacca
gaagcactgactgttgccaaagtttttgacacatttcggatcattgctaaggaatctgga
aaggatagtcaggaaaagaaaaagaattacattaaatcactgcttgttgcagccactgat
tgtgaaccccaatatttgattcgtctcctccagacaaagctacgcattggtttggctgaa
caaacactgttagtagcaatcgctcatgcttttgtgtactcagataatcattcatcacct
cctgcaggtgtagattctcctttggaagaggctgccaagattgtaaagcaagtgtactct
gtgattccggtttatgaaaaaattgtccctgctcttctagctgatggtgtttggaagctt
tcagaaacatgcagtttctcacctggtgttccggttggacctatgctagctaagccaacc
aaaggagtatctgaaattcttgataagtttcaggatatggagttcacatgtgaatacaag
tatgatggtgaacgtgctcagatacactacatggaagatggttccgttgagatatatagc
cgaaatgcagaaagaaatactggaaagtttcctgacgttgttgctgctatctcaagattg
aagaaatcttctgcaacatcatttgttcttgactgtgaactggttgcatatgaccgtgag
aaacagaagatcctgccctttcaggtccttagtacgcgtgctcgtaagaatgttgtcatt
agtgaaatcaaggtcaacgtgtgcatatatgcttttgatatcttgtatcttaatggacaa
ccacttcttcaagagcaacttaatgttcgcagagagcatctttacaagtcatttgaagaa
gaacctggatatttccagtttgctacagctgtagcctcaaacgatctcgaggaaataaca
aaatttcttgaagatgcagtcaacgccagttgcgagggattgattatcaaaacactaagt
aaagatgctacatatgagccttcaaagcggtcaaataactggctaaaactgaagaaggac
tacatggagagtattggcgactcattggatctggtaccaattggtgcttttcatggtcgg
gggaaacgtactggtgtttacggagcctttctcctagcttgttatgattgcaacaacgag
gagtttcagagcatatgtaaaattggaactgggttttctgaagcaatgcttgaagaacgc
tcttccagccttcgttctaaagttattgctaaaccaaagtcatattataggtatgcagaa
accatcaatccagatgtatggtttgaacctaccgaggtatgggaagtgaaagctgctgat
cttaccatcagccctgtgcatcgtgctgcccaaggtatcgtggatcccgggaagggaatt
tctttacgatttccacgtctgatgcgtgtacgagaggacaagaaccccgaggaggcctca
tcagcagagatgatagcggatatgtataatgctcaaaagcacaataataaaaacaatcag
gatgacaatgatgaagactaa

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