Streptomyces davaonensis: BN159_5168
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Entry
BN159_5168 CDS
T02518
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdv
Streptomyces davaonensis
Pathway
sdv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN159_5168 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdv03400
]
BN159_5168 (mfd)
Enzymes [BR:
sdv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN159_5168 (mfd)
DNA repair and recombination proteins [BR:
sdv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN159_5168 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCK29547
UniProt:
K4R8U0
LinkDB
All DBs
Position
5749447..5752977
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAITAAADGNRMHIDLVGPPAARPFAVAALAREAARPVLAVTA
TGREAEDLAAALRTLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQTADLNTVVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTEDVRARARALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAL
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADLELEADTLQLGMHAPETYRGDTAKALADTKGWLADGWRAVYVTEAHGPAA
RTVEVLGGEGIAARLDADLAELSPSVVHVACGSIDYGFVDPALKLAVLTETDLSGQKAAG
KDGARMPARRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFAADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTDTEAKA
VLEGLKEGAVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANTEEDIKAVREELVDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGNNIRFAPVELRESQELRVKRLYPGTVIKPAVH
QVLVPRPKTAKVGGKPLVGRELLGWVGEFLASILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacaccgccctcgcggaagcgatc
accgcggccgccgacggcaaccgcatgcacatcgacctcgtcggccccccggcggcccgc
cccttcgcggtcgccgccctggcccgcgaggccgcccgccccgtgctcgcggtgacggcg
accggccgtgaggccgaggacctggcggccgccctgcgcacgctcctccccccggaaggc
gtcgtcgagtacccctcctgggagaccctcccgcacgagcgcctcagcccccgcagcgac
accgtcggccgccgcctcgccgtcctgcgacggctcgcccacccccgccccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcccccgtgcgctcggtcctccagccccaggtc
aagggcctcggcgaccttgaaccggtcgccctgcgcaccggccagaccgcggacctgaac
accgtcgtggaggccctcgccgccgccgcgtactcccgtgtcgagctggtcgagaagcgc
ggcgagttcgccgtacgcggcggcatcctcgatgtgttcccgccgaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagcgctccctggagatcgccgagcacggcctgtgggcgccgccctgccgcgagctgctg
ctcaccgaggacgtccgggcacgcgcgcgtgcgctcgccgaacagcacccggagctcggc
gaactgctcggcaagatcgccgaggggatcgccgtggagggaatggagtccctggctccg
gtcctcgtcgacgacatggagctgctgctcgacgtcctgcccaagggcgccatggccctg
gtgtgcgatccggagcgggtacgcacgcgtgccgccgatctcgtcgccaccagccaggag
ttcctccaggcgtcctgggcggccaccgcgggcggcggcgaggcgcccatcgacgtcggc
gcggcctccctgtggtccatcgcggacgtccgcgaccgtgcgcgcgagctggacatgatg
tggtggtcggtgtcgccgttcgctgcggacctcgaactggaggcggacaccctccagctg
ggcatgcacgcgcccgagacctaccgcggggacaccgccaaggcgctcgccgacaccaag
ggctggctcgccgacggctggcgcgcggtctacgtcaccgaggcccacggccccgcggcc
cgtaccgtcgaggtgctcggcggcgagggcatcgccgcccgcctggacgccgacctggcc
gaactcagcccgtccgtcgtgcatgtggcgtgcggctcgatcgactacggcttcgtcgac
ccggcactgaagctcgccgtcctcaccgagaccgacctgtccgggcagaaggcggccggc
aaggacggcgcccgcatgcccgcgcggcgccgcaagaccatcgacccgctgaccctggag
tccggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtccag
cgcaccgtgcagggcgccacgcgcgagtacctcgtcgtggagtacgcccccgccaagcgc
ggccagcccggtgaccggctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcgcccacgctgcaccgcctgggcggcgcggactggacgaagaccaag
gcccgcgcgaagaaggccgtcaaggagatcgcggccgacctgatcaagctctacagcgcg
cggatggcggcgcccggccacaccttcgcggccgacacgccctggcagcgcgagctggag
gacgccttcccctacgcggagacgccggaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtcccgatggaccggctgatctgcggtgacgtcggctacggcaag
acggagatcgcggtccgggccgccttcaaggccgtacaggacggcaagcaggtggccgta
ctggtgccgacgaccctgctggtgcagcagcacttcgggaccttctccgagcggtactcc
cagttcccggtcaacgtccgggcgctcagccgcttccagacggacaccgaggcgaaggcg
gtcctggagggcctgaaggagggcgcggtggacgtcgtcatcggcacccaccggctgttc
tcctcggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtggacgtgctgacgatg
tccgcgacgccgatcccgcggaccctggagatggcggtgacgggcatccgcgagatgtcc
acgatcaccaccccgcccgaggagcgccacccggtcctgaccttcgtcggcccctacgag
gagaagcagatcggcgcggccatccgccgcgaactcctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtcgatcgaccgcgcggccgcgcggctccgcgagatcgtcccc
gaggcgcggatcgcgaccgcccacggccagatgtcggagtcggcgctggaacaggtcgtc
gtcgacttctgggagaagaagttcgacgtcctggtctccacgacgatcgtcgagtcgggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctgtcc
cagctgcaccagctgcgcgggcgcgtcggccgtggccgcgagcgcgggtacgcctacttc
ctgtacccgccggagaagccgctgacggagaccgcacacgaacgtctcgcgaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctcctgggcggcgagcagtccggccatatcgcgggcgtcggcttcgacctg
tacgtccggatggtcggcgaggcggtggcggactaccgcgcgtccctggagggcggcgtg
gaggaggagccgccgctggaggtcaagatcgagctcccggtcgacgcgcacgtcccgcac
gactacgccccgggcgagcggctgcgtctccaggcctaccgctccatcgcctccgccaac
accgaggaggacatcaaggccgtacgcgaggaactcgtcgaccgctacggcaagttgccc
gagccggtggagaacctcctcctcgtcgcgggcctgcgcatgctggcacgcgcgtgcgga
gtcggcgagatcgtcctccagggcaacaacatccgcttcgccccggtggaactgcgcgag
tcccaggaactgcgcgtcaagcgcctgtaccccggcacggtcatcaagccggcggtccat
caggtgctggtcccccgcccgaagacggcgaaggtcggcggcaagccgctggtcggacgg
gaactgctgggctgggtcggggagttcctggcgtcgattctggggtcgtag
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