Sedimenticola thiotaurini: AAY24_05065
Help
Entry
AAY24_05065 CDS
T03943
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
seds
Sedimenticola thiotaurini
Pathway
seds03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
seds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAY24_05065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seds03400
]
AAY24_05065
Enzymes [BR:
seds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAY24_05065
DNA repair and recombination proteins [BR:
seds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAY24_05065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKH22062
UniProt:
A0A0F7K2M5
LinkDB
All DBs
Position
1140648..1144106
Genome browser
AA seq
1152 aa
AA seq
DB search
MHDPLNAPIPNKPDERLQWGRLYGMGDALAIASAARTFPGTTMVVADDAQTAAKLEDGLR
FFLAGESIPVFGFPDWETLPYDVFSPLPELVSQRLLTLYRLDRMQQAVLILPVSTLLQRL
PPRQYLQANTLMLKPGDPLSLQEMRRQLEQSGYQYVSQVVEHGEYTIRGSLLDIFPMGSG
LPYRIDLFDEEIETIRTFDPETQRTLDRVEAIEMLPAREYPLDEAGITHFRQAYRNTFEG
DPQRSLIYREVSNGNAPGGLEYYLPLFFEQTASLFDFLPGQLLTIRSTETRDFADQFLQQ
VQGRYEQRRHDPERPLLPPDQLYLDTDHLMERLNRGMSIRLQRSEVESRSKGYSGICNFA
TRVPEPISLQPRTEHPAAALQAFIDRSPGRILFIAESAGRREMLKETLAGFNIRPRQVTD
WRSFVEDEHPLMMTVAPLEQGLWLDQAGLVVITESQLLGERVRQDRRRKAKQRDADQIVR
NLTELHIGAPVVHEDHGVGRYLGLQVLEVGGMTTEFLTLEYARGDKLYVPVSSLHLISRY
AGASPETAPLHRLGGDQWERVKRKAAEKARDVAAELLEIYARRAAHKGHAFPPPGEEYAA
FAASFEFEETPDQLQAIESVIADMTAPHPMDRVVCGDVGFGKTEVAMRAAFMAVQGGRQV
AVLVPTTLLAQQHYDNFSDRFADWPVKVESLSRFRTAKQQKAITDGLAAGTVDIVVGTHK
LLQENIQYKNLGLVVIDEEHRFGVRHKERLKALRSEVDMLTLTATPIPRTLNMAMSGMRD
LSIIATPPAARHPIKTFISQWNDALIVEACQREIKRGGQVYFLHNEVSTIENTANKLEKL
LPGVRVQVAHGQMRERQLEEIMRDFYHQRFNILVCTTIIESGIDVPSANTMIINRADKLG
LAQLHQLRGRVGRSHHRAYTYLITPPPKTLTADAKKRLEAIESLEDLGAGFTLATHDLEI
RGAGELLGEGQSGQIHEVGFSLYSDLLERAVKALKAGEHPNLDRPLDHGAEIDLQLPALL
PEDYLPDVHSRLVLYKRIASAASKAELRELQVEMIDRFGLLPEPAQNLFGITELKLKANP
LGIRKIEAGPAGGRILFDGQPKIDPGQIIRLIQTRPREYKLDGGEKLRFFKDLSDRQRRI
ELVGNILDEISG
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
ttgcatgatccgctgaacgcccccattccgaataagccggatgagcgcctccagtgggga
cggctctatggcatgggtgatgcgctggccattgcctcggcggcccgtacctttccgggc
accaccatggtggtcgccgacgatgcccagaccgccgcaaagctggaggatgggctgcgg
ttttttctggccggtgagtccatcccggttttcggctttcccgactgggagaccctcccc
tacgatgtcttctcgccccttcccgaactggtatcccaacgcctgctgaccctgtaccga
ctggatcgtatgcagcaggcggtgctgattcttccggtcagcaccctgctgcaacgcctg
ccacccaggcagtatctgcaggccaacaccctcatgctgaagcccggcgatccgttatcg
ctgcaggagatgcgccgccaactggaacagtcgggctaccagtacgtctctcaggtggtg
gaacacggcgaatacactatccgcggctccctgctggacatcttccccatggggagtgga
ctgccctaccggatagacctgtttgacgaagagatcgaaaccatccggaccttcgacccg
gagacccagcgcaccctggatcgggtcgaggcaatcgagatgctcccggcgcgggagtat
ccactggacgaagccggcatcacccatttcagacaggcctatcgcaacacctttgagggt
gacccccagcgcagcctgatctaccgggaggtgtccaacggcaatgccccgggtggtctg
gagtactatctgcccctgttttttgaacagaccgctagcctgtttgattttctgcccggc
cagctgttgaccatccgcagtaccgaaacccgcgactttgccgaccagtttctgcaacag
gtccaggggcgctacgagcagcgccggcatgacccggaacggccactgctgcccccggat
cagctctatctggataccgatcacctgatggaaaggctgaatcgcggcatgtcgatccgg
ctgcagcgcagcgaagtggagtcccgcagcaagggttacagcgggatctgtaatttcgcc
acccgggtacccgaaccaatcagcctgcagccacggaccgagcatcccgccgccgcactg
caggcgttcatcgatcgatcgccgggccgcatcctgtttattgccgagagtgccggccgc
cgggagatgctgaaagagaccctggctggctttaacattcgcccgcgccaggtgaccgac
tggcgctcatttgtcgaggatgagcatcccctgatgatgaccgtggcgcctctggagcag
gggctctggctggatcaggccggcctggtggtgatcaccgagagccagctgctgggagaa
cgggtccgccaggaccggcgccgaaaagccaaacagcgggacgccgatcagatcgtccgc
aacctgaccgaactgcacatcggtgcaccggtggtccacgaagaccacggtgtcggccgc
tatcttggtctgcaggtgctggaagtgggtggcatgaccaccgaattcctgaccctggag
tatgcccggggggacaaactctatgtaccggtctcgtcgctgcacctgatcagtcgctat
gccggcgcctcgccggagacagcaccattgcatcgcctgggtggcgaccagtgggaacgg
gtaaaacggaaagcggcggaaaaggcacgggatgtggcggcagaactgctggagatctac
gcccgccgggccgcccacaaggggcacgccttcccacctccgggggaagagtatgctgcc
ttcgccgcctctttcgaatttgaagagacgcctgaccagctccaggcgatcgagtcggtc
atagccgacatgactgccccgcatcccatggatcgggtggtctgcggcgacgtgggcttc
ggcaagaccgaagtggccatgcgcgctgccttcatggcagttcagggtggtcggcaggtg
gccgttctggtccccaccaccctgctggcccagcagcactacgataacttttccgatcgc
ttcgccgactggccggttaaagtggagagtctgtcccgtttccgcaccgccaaacagcag
aaggccatcaccgatggactggcagcgggcacggtggatatcgtggtgggtacccataaa
ctgctccaggagaacattcagtacaaaaacctcggcctggtggtgatcgacgaggagcac
cgcttcggcgtacggcataaggagcgactcaaggcactgcgcagtgaggtggatatgctg
accctgactgccacgccgatccccagaaccctgaacatggccatgtccgggatgcgcgat
ctctccatcatcgccaccccgccggccgccagacatccgatcaagacctttatcagccag
tggaacgacgccctgatcgtcgaggcgtgccagcgcgaaatcaagcgtggtggacaggtc
tatttcctgcacaatgaagtgagcaccatcgagaacaccgccaacaagctggagaagctg
ttacccggcgtgcgggttcaggtggcccatggccagatgcgcgagcggcagctggaggag
atcatgcgtgacttctaccaccagcgcttcaacatcctggtctgtaccaccattattgag
agtggcatcgatgtcccgagtgccaataccatgatcatcaaccgggctgacaagctcggt
ctcgcccagctgcaccagctgcgcggacgggttggacgctcccatcaccgggcctatacc
tacctgataacgccaccgcccaagacactcaccgctgacgcgaagaaacgcctggaagct
attgaatcacttgaagatctgggtgccggattcaccctggcgacccacgatctggagatc
cgtggtgcaggagagctgctgggggaaggccagagtggccagatacacgaagtcgggttc
agtctttacagcgacttgctggagcgggccgtcaaggcgctgaaagccggagagcacccc
aacctggaccggccgctggaccatggcgccgagatcgatctgcaactgcccgccctgctg
ccggaagattatctgccggacgtccactcccgtctggtgctgtacaaacggatcgccagc
gccgcatccaaagcggaattgcgggagctgcaggtggagatgatcgatcggttcggcctg
ttaccggaaccagcccagaatctgttcggtatcaccgagttgaaactgaaggccaatccc
ctgggaattcgcaagatcgaagccggacccgcgggtggtcgtattctgtttgacggccaa
ccaaaaatcgatccgggacagatcatccggctgatccagacccgtccgcgggagtacaaa
ctggatggcggcgagaaactgcgcttcttcaaggatctcagtgaccgtcagcgccgcatt
gaactggtgggcaatattctggatgagataagcggttaa
DBGET
integrated database retrieval system
