Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67: SPUCDC_1457
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Entry
SPUCDC_1457 CDS
T02824
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sega
Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67
Brite
KEGG Orthology (KO) [BR:
sega00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sega03019
]
SPUCDC_1457 (hrpA)
Enzymes [BR:
sega01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPUCDC_1457 (hrpA)
Messenger RNA biogenesis [BR:
sega03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SPUCDC_1457 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
AAA_16
ResIII
PhoH
NTPase_1
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AGU64326
LinkDB
All DBs
Position
complement(1487912..1491832)
Genome browser
AA seq
1306 aa
AA seq
DB search
MLPKSFMTEQSTLTLQVLQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQAIFQTMAKEI
EQAVAQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKIC
MELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMT
DGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDP
ERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDIL
IFMSGEREIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETS
LTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSE
DDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGA
ITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERP
VDKQQASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREW
QDIYTQLRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEYTGARNARFSI
FPGSGLFKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQG
AVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRA
EVEELEHKSRRRDILVDDDTLFEFYDQRISHDVISARHFDSWWKKISRETPDLLNFEKSM
LIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQ
IPGLRRELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVT
VDREDWHWDQVPGHLKITFRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQ
SGLHIWSFGELPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLL
LLNIPSPIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWSEAGF
TALHEKVRAELNDTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVY
RGFVTGNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPA
RREDDDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccaagagctttatgactgaacaatctacgttgacgcttcaggtgttacagcag
cggctggatgcactgatgctgcgcgacaaacagcgctttgcgcgccgcctgcatggcgta
aagaaagtaaaaaatcctgatgcgcaacaggccattttccagacgatggcgaaagaaatt
gaacaggctgtggcgcaagtcgccctccgtgaagcggcgcgcccctcaatcacttatccg
caaaatctgcctgttagccagaagaaacaggacattctggaagcggtccgcgatcatcag
gtagtgatcgtagcaggggaaaccggttccggtaaaaccacccagttgccgaaaatttgt
atggaactgggacgtggaattaaaggacttattggtcatactcagccgcgtcgcctggcg
gcgcgcaccgtcgctaaccgcattgccgaagagttgcaaacggagccaggcggctgcatc
ggctataaagttcgtttcagcgatcatgtcagtagcaacaccatggtcaaactgatgacg
gacggtatcctgctggcggaaatccagcaggacagactattgatgcagtatgacaccatc
attattgatgaagcgcatgaacgcagcctgaatattgacttcttgctcggctatctgaaa
gagcttctgccgcgtcgccccgatctgaaagtgattattacctctgcgaccatcgacccg
gaacgcttctcgcgccactttaataacgcgccgattatcgaagtctctggccgaacgtat
cccgtagaagttcgttatcgccccatcgtggaagaggctgacgacactgaacgcgatcag
ctacaggcaattttcgacgctgttgatgaactggggcgtgaaagtcccggcgatatcctg
atttttatgagcggagagcgggaaatccgcgataccgccgatgccctgaacaagctgaac
ttacggcataccgaagtgttgccgctgtatgcacgcttgtcgaacagcgaacagaaccgc
gttttccagtcgcacagcggacgccgtatcgtgctggcgactaacgtggcggaaacctcg
ctgacggtgccgggtatcaagtatgtgatcgatcctggcactgcgcgcatcagccgctac
agctaccgcactaaagtgcagcgcctgccgattgaaccgatctcacaggcttccgccaat
cagcgtaaagggcgttgcggacgcgtatcggaagggatttgcattcgtctgtattcggaa
gatgactttttgtcacgtccggaatttaccgacccggaaattctacgtaccaacctggcg
tcggttattttgcagatgaccgcactggggctgggtgacatcgccgccttcccgtttgtt
gaagcgccggataagcgcaatattcaggatggcgtgcgtttgttggaagagctgggggcg
attaccgccgacgaacagcaaacggcatataagctgacgccgctgggccgacaattatcc
cagttgccggtcgacccgcgcctggcgcgtatggttctggaagcgcaaaagcatggctgt
gtgcgcgaagcgatgatcattacttccgcactctctattcaggatccgcgcgagcgccca
gtggataagcagcaggcttccgatgagaaacaccggcgctttcatgataaggaatccgat
tttctggcgtttgttaacctgtggaattacctcggcgagcaacaaaaggccctgtcgtcg
aatcaattccgccgtctgtgtcgcaccgactatctgaactatttacgcgtgcgtgagtgg
caggatatctatacccaactgcgtcaggtggtaaaagagctggggattccggtaaacagc
gaacccgcagagtaccgggaaattcacgttgcgttgttaacggggctgttgtcgcatatc
gggatgaaagatgccgataaacaagagtacaccggcgcgcgtaacgcccgattctctatt
ttccccggatccggtttattcaaaaaaccgccgaaatggacaatggtcgcagaactggtg
gagaccagccgtttgtgggggcgcatcgctgcccgcattgagccagaatgggtggaaccg
gtagcccagcacctgattaaacgttcatatagcgaaccgcactgggagcgggcgcaaggc
gcggtgatggcgacggaaaaggttactgtctacggtctgccgattgtcgccgcgcgcaag
gtgaattacagccagattgacccggcgttgtgtcgtgagttgtttatccgccatgcgctg
gtggagggggactggcaaacccgtcatgccttcttccgtgagaatctgaaattgcgtgcg
gaagtcgaggaacttgagcacaaatctcgccgccgcgatatcctggtggatgacgatacc
ctgtttgagttttatgaccagcgtattagccatgacgttatttccgcccgccactttgat
agttggtggaaaaaaatcagccgcgagacgccggatctgctcaactttgaaaaaagtatg
ctgattaaagaaggcgcggaaaaaatcagcaaactggattacccgaatttctggcaccag
ggcaatctcaagctgcgtttgagctatcagtttgaaccgggcgcggatgctgacggcgtg
accgtccatattccgttgccgctacttaaccaggttgacgagagcggttttgaatggcag
atcccggggctgcgccgtgaattagtgattgcgctgattaaatcgttgccaaaaccggta
cgtcgcaactttgttccggcgccaaactatgctgaagcgtttttgggtcgcgtaacgccg
ctggagctgccgctgctggacgctctggagcgtgaactgcgccggatgaccggcgtcacg
gtcgaccgggaagactggcattgggatcaggtgcccgggcatctgaaaatcacgtttcgc
gtggtgaatgacaaaaacaagaaactgcaggaagggcgttcgctcgccgagcttaaaaat
gcgctgaaaggcaaagtgcaggagacgctctcggcggtggcggatgacggcatcgagcag
agcgggctgcatatctggagtttcggcgagctgccggaaagctacgaacagaaacgcggt
aattataaagtgaaggcgtggccagcgttagtggatgagcgtgacagcgtcgctatcaaa
ttgtttgataatccgctggaacaacaacaggcgatgtggtgcggtttacgccgtctgctg
ttgctcaatattccttcaccgattaagtatctgcatgagaaattgccgaataaagccaag
ctggggctgtactttaacccgtacggcaaagtactggagttgattgatgactgtatcgcc
tgcggggtagataagctgatagatgccaacggcgggccggtttggagcgaagcaggtttc
accgcgctgcacgaaaaggtacgcgccgagctgaatgatactgtggtggatatcgcgaag
caggttgagcggatcctgacgaccgtattcaatatcaataagcgtctgaaagggcgggtg
gatatgagcatggcgttggggctttccgatatcaaggcgcagatgagcggtctggtatac
cgtggttttgtgactggcaacggctttaaacgtctcggcgatacgctgcgttatctgcag
gcaattgaaaagcggctggagaaactggctgtcgatccgcaccgcgatcgggcgcaaatg
ctgaaagtcgaaagcgtccagcaggcgtggcaacaatggataaataaattgcctccagcg
cgtcgcgaagatgatgatgttaaagagatccgttggatgattgaagaactgcgtgtcagt
tatttcgcccaacagctcggtacgccttatcctatttccgataagcgtattttacaggcc
atggatcagattacggcctaa
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