Sideroxyarcus emersonii: MIZ01_1303
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Entry
MIZ01_1303 CDS
T08108
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
seme
Sideroxyarcus emersonii
Pathway
seme03410
Base excision repair
seme03430
Mismatch repair
seme03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
seme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MIZ01_1303
03430 Mismatch repair
MIZ01_1303
03440 Homologous recombination
MIZ01_1303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seme03400
]
MIZ01_1303
DNA repair and recombination proteins [BR:
seme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MIZ01_1303
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MIZ01_1303
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MIZ01_1303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BCK87521
LinkDB
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Position
complement(1316212..1317903)
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AA seq
563 aa
AA seq
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MSKIAQRSYPADIATQLAGTGIPPLLARIYAARGIGEAAQLDTDIKRLLPFTLLKNAETM
AELLANAIAAQKKILIVADYDADGATACAVAMRGLGALGARVDFIVPNRFEYGYGLTPEI
VRLAKRSEPDILLTVDNGIASVDGVAEAARLGMQVLVTDHHLPGDTLPNAWCIVNPNQPG
CAFPSKHLAGVGVMFYVLMALRAEMRKRGMFAGKTEPNLGTLLDLVALGTVADVVRLDDN
NRILVQQGLQRIRAGRSCAGIQALLRVARRPAMQASAYELGFIVGPRLNAAGRLEDMSLG
IRCLLTDDTAEAGEIAAKLDALNQERRSIEADMQDSALATLDSFDPADGYSLSLFNEEWH
QGVIGILASRLKDKFHRPVIAFARAQTGELKGSGRSIAGLHLRDALDLVSKRHPHLILKF
GGHAMAAGLSIHEDSLHDFRSAFEAVARELLDAEALVKTIATDGTLDAMEFSLSIARDLQ
RQVWGQGFPEPLFEGDFRVQAQRVVGEKHLKLKLSSPAGSFDAIRFFSAEPAPDTIHAVY
SLSINEYNGSETLQLIVRHWTGD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagatcgcccaacgcagctaccccgcagacatcgcaacacaactggccggaacc
ggcatccctcctttgctggcacgcatctatgcggcacgcggcatcggtgaagcggcgcag
ctggataccgacatcaagcgcctgctgccgttcactctgctgaaaaatgcggaaaccatg
gccgaactgctggccaatgccatcgctgcacagaaaaagatactgatcgtcgccgactac
gatgccgacggcgccacggcctgtgccgttgccatgcgcggcctgggtgcactcggcgcc
agggtggacttcatcgtgcccaaccgtttcgaatacggctacggcctgacgccggagatc
gtacgcctggccaagcgctcggaacctgacatcctgctcaccgtggacaacggtatcgcc
agcgtggacggcgtggccgaggccgcccgactgggcatgcaggtgctggtgaccgaccat
cacctgcccggcgatacgctgccgaatgcatggtgcatcgtgaatcccaaccagccgggc
tgcgccttccccagcaagcatctggcaggcgtgggagtaatgttctatgtattgatggcg
ttacgggccgaaatgcgcaagcgcggcatgttcgccggcaagaccgaaccgaatctgggt
accctgctcgatctggtcgcgctgggaacggtcgcagacgtggtcaggctggacgacaac
aaccgcatcctggtacagcagggcctgcagcgtatccgcgccggacgcagttgtgccggg
attcaggccttgctgcgcgtggcacgcaggcccgccatgcaggcatcggcctatgaactg
ggcttcatcgtcggaccgcgcctgaatgcggccggacgcctggaagacatgagcctgggc
atccgctgcctgctgacggacgataccgccgaagccggcgaaattgccgcaaaactggat
gcgctgaaccaggaacggcgcagcatcgaggcggacatgcaggacagcgcactggccacg
ctcgactcattcgacccggccgatggctattcgctctcgctgttcaacgaggaatggcac
cagggcgtgatcggcatcctggcctctcggctgaaggacaagttccaccgcccggtgatt
gccttcgcccgcgcccagaccggcgaactcaaaggctccggccgcagcatcgccgggctg
cacctgcgcgatgcgctcgacctggtatccaaacgccatccgcatctgatcctgaaattc
ggcggccatgccatggcagcgggattgagtatccatgaagacagcctgcacgacttccgg
tccgctttcgaagctgttgcacgcgaactgctcgacgcagaggcgttggtcaagaccatt
gccaccgacgggacactcgatgcaatggaattttctttaagcatcgcacgcgacctgcaa
cggcaggtatgggggcaaggctttcccgagccgctgttcgaaggcgacttccgcgtgcag
gcgcagcgcgtggtcggcgagaaacacctgaagctcaaactgtcgtctcctgccggaagt
ttcgatgccatccgcttcttttcggcagagccggcgccggacactatccatgcggtgtat
agtttgagcatcaatgaatacaatggcagcgagacgttgcagctgatcgtgcgccactgg
acaggagattga
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