Saccharopolyspora erythraea: SACE_4181
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Entry
SACE_4181 CDS
T00492
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sen
Saccharopolyspora erythraea
Pathway
sen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SACE_4181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sen03400
]
SACE_4181
Enzymes [BR:
sen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SACE_4181
DNA repair and recombination proteins [BR:
sen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SACE_4181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAM03450
Kitasato:
SACE_4181
Cambridge:
SACE_4181
UniProt:
A4FHC5
LinkDB
All DBs
Position
4653624..4655567
Genome browser
AA seq
647 aa
AA seq
DB search
MSSAKKSERLAEYQRKRDFSRTSEPSGREGGARAGGNRFVVQRHRARRRHYDLRLELDGV
LLSWAVPKGPTLDPKARHLAVRVEDHPIEYTDFEGVIPEGEYGGGDVIVWDRGTWEPAET
DDPAEAIEAGNLHFDLHGEKLGGRFVLVRRGDDDSGKEQWLLLHKKDEHAEAGWTAEDHL
ESVKSGRTNEEVAAAPEAMWRSDLPASEAEVPVDGAPAGKSGRSRSGERKTARSSGAGSA
SSDKASGKASGTGSSSTRSSGKASGTGSSGRASGSSSSSKAGSGTSKKAGTKPAKTREKS
GAKQRSASARRSGRKTDEEKSGGGRDERPRWDPPSEEELAALDELGAKGPWEVGGRRLAL
TNLDKVLFPGRDDEPPVTKRDFVRYHARIGPVILPYLVGRPLNTHRYPDGADKPGFWHKE
VPSHAPYWLTSWRYEAADPDETQNYVIADSVPALAWLANYAALELHPWTSWASDVEHPTW
ALFDIDPGSKTSFEDVLALARLHRTALEHLGVRAGPKVTGQRGVQIWVPIAPHYTYEETR
RWVEKVSKAIGATVPDLVSWAWQKNERRGLARLDYTQNVVNKTLVAPYSARPRPGAPVSV
PISWDELDDPDLTPDRWTVRTVFDRLDEVGDPLAPLVGLEQELPPIQ
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgagttctgcgaagaagtccgagcggctcgccgagtaccagcgcaagcgcgacttcagc
cgcaccagcgagccgtccggacgggaaggcggcgcgcgcgccggtggcaaccggttcgtc
gtccagcgccaccgcgcgcggcgccgccactacgacctgcggctcgagctcgacggcgtg
ctgctgagctgggcggtgcccaagggcccgacgctggacccgaaggccaggcatctggcc
gtccgggtcgaggaccaccccatcgagtacaccgacttcgaaggcgtgatccccgagggc
gagtacggcggcggggacgtcatcgtgtgggaccgcggcacgtgggagcccgccgagacc
gatgacccggccgaggcgatcgaggccgggaacctgcacttcgacctgcacggggagaag
ctcggcgggcgcttcgtgctggtccggcgcggagacgacgactcgggcaaggagcaatgg
ctgctgctgcacaagaaggacgagcacgccgaggcggggtggacggccgaggaccacctc
gagtcggtcaagagcggccggacgaacgaggaggtcgccgcggcgccggaggcgatgtgg
cgcagcgacctgcccgcctccgaggcggaggtcccggtggacggcgcaccggccgggaag
tccggccggtcgcggtccggggagcgcaagacggcccggtccagtggggcgggcagcgcg
tcgtcggacaaggcgtccggcaaggcgtccggcaccggctcgtcgagcacccgttcttcc
ggcaaggcgtccggcaccggctcgtcgggcagggcctccggcagttcctcgtccagcaag
gcgggatccgggacgtcgaagaaggccggcaccaaacccgccaagacgcgggagaagtcg
ggggcgaagcagcggtccgcctccgcgcgcaggtccgggcgcaagaccgacgaggagaag
tccggaggcgggcgcgacgagcgaccccggtgggacccgccctccgaggaggagctggca
gcgctggacgaactgggcgccaaggggccgtgggaggtcggtggacgccgcctcgcgctg
accaacctcgacaaggtcctgttcccgggccgcgacgacgaaccgccggtgaccaagcgc
gacttcgtccgctaccacgcgcggatcggaccggtgatcctcccctacctggtgggccgc
cccctcaacacccaccgctaccccgacggcgcggacaaacccggtttctggcacaaggag
gtgccgagccacgcgccctactggctcaccagttggcgctacgaggcggccgacccggac
gagacgcagaactacgtcatcgccgacagcgtccccgcgctggcctggctcgccaactac
gcggcgctggagctgcacccgtggacgtcgtgggcctccgacgtggagcacccgacgtgg
gcgctgttcgacatcgacccggggtccaagacctccttcgaggacgtgctggccctcgcc
cggctgcaccgcaccgcgctcgagcacctcggcgtgcgggcggggcccaaggtcaccggt
cagcgcggtgtgcagatctgggtgccgatcgcgccgcactacacctacgaggaaacccgc
cgctgggtggagaaggtctccaaggccatcggtgccaccgtccccgacctggtcagctgg
gcgtggcagaagaacgagcggcggggtctggcccgtctggactacacgcagaacgtcgtc
aacaagacgctcgtcgcgccctacagcgcccgaccgcgcccgggcgcgccggtgtcggtc
ccgatcagttgggacgagctcgacgaccccgacctgacgcccgaccggtggacggtgcgc
accgtcttcgaccgcctcgacgaggtgggagacccgctcgcaccgctggtgggcctggag
caggagctgccaccgatccagtga
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