Streptomyces endophytica: OJ254_05715
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Entry
OJ254_05715 CDS
T09208
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
seng
Streptomyces endophytica
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
seng03016
]
OJ254_05715 (thpR)
Enzymes [BR:
seng01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
OJ254_05715 (thpR)
Transfer RNA biogenesis [BR:
seng03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
OJ254_05715 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
UZJ30014
LinkDB
All DBs
Position
1273294..1273860
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AA seq
188 aa
AA seq
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MRLFAAVLPPAAVLDELAAEVALLKKLPAAERLRWSARDGWHFTLAFYGEVPEDTVPELR
ERLGRAAHRRDPYELRIAGGGRFADRVVWAGADGDRPAMRKLADSAAAAGRRVGLDVDEH
RPYTPHLTLARNRVGHLKLAPYAAALKEFSGRSWTVGALSLMRSHPPAPGTAGAQSHYEE
VASWPLGE
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgagactcttcgccgccgtcctgccgcccgccgccgtgctcgacgaactcgccgccgag
gtggcgctgctgaagaagcttcccgcggccgagcgtctgcgctggagcgcacgggacggc
tggcatttcaccctcgccttctacggcgaggtccccgaggacaccgtgcccgagctgcgg
gaacggttgggccgggcggcccaccgccgggatccgtacgagctgcggatcgccggcggt
ggccgtttcgcggaccgggtggtgtgggccggcgcggacggcgaccgtcccgccatgcgc
aagctggccgactcggcggcggccgcgggccggcgggtgggtctcgacgtggacgagcac
cgcccctacaccccgcacctcaccctcgcccggaaccgcgtcgggcatctgaagctcgcc
ccgtacgcggccgccctgaaggaattcagcggccgttcctggacggtcggggcgctctcc
ctgatgcgcagccatccgccggcccccggtacggccggagcgcagtcccactacgaagag
gtcgcgtcctggccgctgggcgagtga
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