Streptomyces endophytica: OJ254_12735
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Entry
OJ254_12735 CDS
T09208
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
seng
Streptomyces endophytica
Pathway
seng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OJ254_12735 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seng03400
]
OJ254_12735 (mfd)
Enzymes [BR:
seng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OJ254_12735 (mfd)
DNA repair and recombination proteins [BR:
seng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OJ254_12735 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UZJ31052
LinkDB
All DBs
Position
2802486..2806061
Genome browser
AA seq
1191 aa
AA seq
DB search
MSLTGLLDAVVRDPALAEAVRAATDGRRPHVDLVGPPAARPFVIAALAREAKRPVLAVTA
TGREAEDLAAALRSLMPAGEDNSVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLTHPSQ
DDPTAGPVSVVVAPIRSVLQPQVKGLGELEPVSLRTGQTADLEEIVDGLAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEIAEHGLWAPPCR
ELLLTADVRDRAATLAERHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPKGS
MAVVCDPERVRTRAADLVATSQEFLQASWAATAGGGDAPIDVGAASLWGIADVRDRAREL
DMMWWSVTPFASGDLGPGADGDEDLAAGDDGDTLKLGLHAPETYRGDTQRALADTKQWLA
DGWRTVYVTEAHGPAARTVEVLGGEGIAARLDADLPEISPALVHVACGSLDNGFVAPQLR
LAVLTETDLSGQKAAGKDGQRMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQ
GATREYLLVEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAK
KAVKEIAADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEK
SVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYGQFPV
SVKALSRFQTDTEAKATLEGLRDGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEH
KEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQI
GAAIRRELLREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFW
EKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPP
EKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRM
VGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEED
IAAVREELTDRYGKLPEPVENLLLVAGLRMLARSCGVSDITLQGANIRFGPVDLRESQEL
RLKRLYPRTVLKPAAHQILVPRPTTAKIGGKPVVGRELLAWVGEFLTTVLS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgactggtctgctcgacgccgtcgtacgggacccggcgctcgccgaagcggtc
cgggccgcgaccgacggacgccgcccgcacgtggatctcgtgggcccgccggccgcccgc
ccgttcgtgatcgccgcgctcgcccgcgaggcgaagcgcccggtgctggcggtcaccgcc
accggccgggaggccgaggacctcgccgccgcgctgcgcagcctgatgccggccggcgag
gacaactccgtcgtcgagtacccgtcctgggagacgctgccgcacgagcggctctcaccg
cgctcggacaccgtcggccggcgcctggcggtgctccgccggctcacccaccccagccag
gacgaccccaccgcgggccccgtctccgtcgtcgtcgcgccgatccgctcggtgctccag
ccgcaggtcaagggcctgggcgagctggagccggtcagtctgcgcacgggccagaccgcc
gatctggaggagatcgtcgacggcctggcggcggccgcctacgcccgcgtcgaactggtc
gagaagcgcggcgagttcgcggtccgcggcggcatcctggacgtcttcccgcccaccgag
gagcaccccctccggatcgagttctggggcgacgacgtcgaggagatccgctacttcaag
gtcgccgaccagcgctccctggagatcgccgagcacggcctgtgggcgccgccgtgccgt
gagctgctgctcaccgcggacgtccgcgaccgggccgcgaccctcgccgagcgccacccg
gagctgggcgaactcctcggcaagatcgccgagggcatcgcggtcgaaggcatggagtcg
ctcgcaccggtcctcgtcgacgagatggagctgctgctcgacgtcctgcccaagggctcc
atggccgtggtctgcgacccggagcgggtgcgcacccgggccgccgacctggtcgcgacc
agccaggagttcctgcaggccagctgggccgcgacggccggcggcggcgacgcgcccatc
gacgtcggcgcggcgtccctgtggggcatcgcggacgtccgcgaccgggcccgtgagctg
gacatgatgtggtggtcggtgacgccgttcgcctccggcgacctcgggcccggtgccgac
ggcgacgaggacctggccgccggcgacgacggcgacaccctcaagctcggcctgcacgcc
cccgagacgtaccgcggcgacacccagcgggcgctggccgacaccaagcagtggctcgcc
gacggctggcgcacggtctacgtcaccgaggcgcacggccccgcggcccgtacggtcgag
gtgctcggcggcgagggcatcgccgcccgcctggacgccgacctccccgagatctcaccc
gccctcgtccacgtcgcctgcggctccctcgacaacggcttcgtcgccccgcagctccgg
ctcgccgtgctgaccgagaccgacctgtccggccagaaggccgccggcaaggacggccag
cggatgccggcccgccgccgcaagaccatcgacccgctcaccctcgaagcgggcgactac
atcgtccacgaacagcacggcgtgggccgctacatcgagatggtgcagcgcacggtccag
ggcgccacccgcgagtacctcctcgtcgagtacgcgcccgccaagcgcggccagcccggc
gaccgcctctacatccccaccgaccagctggagcaggtcaccaagtacgtgggcggcgag
gccccgaccctgcaccgcctcggcggcgccgactggaccaagaccaaggcgcgcgcgaag
aaggccgtcaaggagatcgccgccgacctgatcaagctgtactcggcccggatggcggcc
cccggccacaccttcggcccggacaccccctggcagcgcgagctggaggacgccttcccg
tacgcggagacgcccgaccagctcacgaccatcgccgaggtcaaggaggacatggagaag
tcggtcccgatggaccggctgatctgcggcgacgtcggctacggcaagaccgagatcgcg
gtccgcgccgccttcaaggcggtccaggacggcaagcaggtcgccgtcctggtcccgacc
acgctgctcgtccagcagcactacggcaccttcaccgagcggtacggccagttcccggtc
agcgtcaaggcgctgtcccgcttccagaccgacaccgaggccaaggcgaccctggagggc
ctgcgggacggcgccgtcgacatcgtcatcggcacccaccgcctgttctcctccgagacc
aagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttcggcgtcgagcac
aaggaacagctcaagaagctccgcgccaacgtcgacgtcctgacgatgtccgcgaccccg
atcccccggaccctggagatggcggtcaccggcatccgcgagatgtccacgatcaccacc
ccgccggaggagcggcacccggtcctgaccttcgtcggcccctacgagcagaagcagatc
ggcgccgccatccgccgcgaactgctccgcgagggccaggtcttctacatccacaaccgc
gtcgagtccatcgaccgcgccgccgcccgcctccgcgagatcgtccccgaggcgcggatc
gccaccgcccacggccagatgtcggagtcggccctggaacaggtcgtcgtcgacttctgg
gagaagaagttcgacgtcctggtctccaccacgatcgtggaatccggcatcgacatctcc
aacgccaacaccctgatcgtggagcgcggcgacaacttcggcctgtcgcagctgcaccag
ctccgcggccgggtcggccgcggccgcgaacgcggctacgcgtacttcctctacccgccc
gagaagccgctgaccgagaccgcccacgagcgtctcgccaccatcgcccagcacacggag
atgggcgccggcatgtacgtcgccatgaaggacctggagatccgcggcgccggaaacctc
ctcggcggcgagcagtccggccacatcgccggcgtcggcttcgacctgtacgtgcggatg
gtcggcgaggccgtcgccgactaccgcgcgtccctcgaaggcggcgtggaggaagagccg
ccgctcgaagtgaagatcgagctgcccgtcgacgcgcacgtcccgcacgactacgccccc
ggcgagcggctgcgcctccaggcgtaccgcgccatcgcttccgcgaactccgaggaggac
atcgccgcggtccgcgaggagctcaccgaccgctacggcaagctgcccgagccggtcgag
aacctcctgctcgtcgccggcctgcggatgctggcccgttcctgcggcgtctcggacatc
accctccagggcgccaacatccgcttcggcccggtcgacctccgcgagtcccaggagctc
cgcctgaagcggttgtacccccgtacggtcctcaagccggccgctcaccagatcctggtt
ccccggcccacaacggccaagatcggcggcaagccggtggtgggacgtgagttgctcgcc
tgggtgggcgagttcctcacgacggtcttgagctag
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