Streptomyces endophytica: OJ254_22150
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Entry
OJ254_22150 CDS
T09208
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
seng
Streptomyces endophytica
Pathway
seng03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OJ254_22150 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seng03400
]
OJ254_22150 (ligD)
Enzymes [BR:
seng01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OJ254_22150 (ligD)
DNA repair and recombination proteins [BR:
seng03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OJ254_22150 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UZJ32484
LinkDB
All DBs
Position
4939009..4939998
Genome browser
AA seq
329 aa
AA seq
DB search
MEATDRDTDTGATRTGRGGAAGKARKGGTHTLRAGGRTVEVHRPDKVLFPDDGLTKADVV
DYYRQVAAAMVPHLRDRPLMLERLPEGLEGLHFMQKETPDHYPDWIRREEVAKEGGTVTH
PVCDDKATLLYLADQACLTLHRWLSRTGRPHHPDRLVFDLDPPGSGFEPVREAARQLVGL
LDELGLPTLLMTTGSRGLHVIVPLDGRADFDTVRGFAQDVAEVLAGRHPDRLTTAVRKKA
RGDRLYLDVQRNAYAQTAVAPWSLRARSGAPAAVPIRHEQLDDPELTARSWSLKDMAGVV
EQARARPWSAVPARGRSLRTARKRLDALR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggaggccaccgacagggacacggataccggcgcgaccaggaccggccggggcggcgcc
gccgggaaggcccgcaagggcggtacgcacacgctgcgggcgggcggccggaccgtggag
gtgcaccgccccgacaaggtgctgttcccggacgacgggctgaccaaggccgatgtcgtc
gactactaccgccaggtggccgcggccatggtcccgcacctccgggaccgcccgctgatg
ctggaacggctcccggaagggctggaggggctgcacttcatgcagaaggagaccccggac
cactaccccgactggatccgccgcgaggaggtcgccaaggagggcggcaccgtcacccac
cccgtctgcgacgacaaggccaccctcctctacctcgccgaccaggcctgcctcacgctg
caccgctggctgtcccggaccggccggccccaccacccggaccggctggtgttcgacctc
gacccgccgggctccggcttcgagcccgtacgggaggccgcgcggcaactcgtcgggctg
ctggacgaactcgggctgccgaccctgctgatgaccaccggttcgcgcggactgcacgtc
atcgtcccgctggacggccgcgccgacttcgacaccgtgcgcggcttcgcccaggacgtg
gcggaggtgctggccggacgccatccggaccggctcaccacggccgtgcgcaagaaggcc
cgcggcgaccggctctacctggacgtccagcgcaacgcctacgcacagacggccgtcgcc
ccctggtcgctacgggccaggtccggcgccccggccgccgtgccgatccgccacgagcag
ctcgacgaccccgaactgaccgcgcgcagctggtcgttgaaggacatggcgggggtcgtg
gagcaggcgcgggcccggccgtggtcggcggtgccggcccgcgggcggtcgctgcgcacc
gcccgcaagcggctcgacgccctgcgctga
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