Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069: CFSAN002069_10245
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Entry
CFSAN002069_10245 CDS
T02735
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
senh
Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069
Pathway
senh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
senh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFSAN002069_10245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senh03019
]
CFSAN002069_10245
03016 Transfer RNA biogenesis [BR:
senh03016
]
CFSAN002069_10245
Enzymes [BR:
senh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CFSAN002069_10245
Messenger RNA biogenesis [BR:
senh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFSAN002069_10245
Transfer RNA biogenesis [BR:
senh03016
]
Prokaryotic type
tRNA degradation factors
CFSAN002069_10245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
MetOD2
OB_Dis3
TFIIE_beta
Rho_RNA_bind
Sucrose_synth
Motif
Other DBs
NCBI-ProteinID:
AGQ77850
LinkDB
All DBs
Position
255715..258153
Genome browser
AA seq
812 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVELNIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EDVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGNKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGESKNAGKRRQVGKKVNFEPDSAFRGEKKAKPKAAK
KDARKAKKPSAKTQKIAAATKAKRAAKKKAAE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagcagaaaaatacgcgaatcctatcccgagc
cgggaatttatcctcgaacatttaacgaaacgtgaaaaaccggccagtcgcgaagaactg
gccgtagaactgaatattgaaggcgaagagcagcttgaagccttgcgtcgccgcctgcgc
gcgatggagcgcgacggacaactggtctttacccgccgccagtgctatgcgctgccggaa
cgcctcgacctgctgaaaggcaccgtgatcggtcatcgtgacggttacggtttcttacgt
gtcgaaggccgcaaagacgatctgtatctttccagcgagcagatgaaaacctgtattcat
ggcgatcaggtgctggcgcagccgctgggcgccgatcgtaaaggtcgccgcgaagcgcgt
atcgtccgtgtactggtaccgaaaaccagtcagatagtcgggcgttatttcaccgatgcg
ggcgtcggctttgtggtgccggacgacagccgtctcagcttcgacattcttatcccgcca
gaagacgtcatgggcgcgcggatggggttcgtggtcgtggttgaactgacccaacgtcca
actcgccgtactaaagcggtagggaaaatcgtcgaagtgctgggcgacaatatgggcacc
ggtatggcggttgatatggcgctgcgtacccatgaaataccttacatctggccgcaggcg
gtagagcagcaggtcgccgggctgaaagaagaggtgccggaagaggcgaaagtcggtcgt
gtcgatctgcgcgatttgccgctggtcacgattgatggcgaagatgcccgtgactttgac
gacgcggtttactgtgagaaaaaacgcggcggcggctggcgtttgtgggtcgctattgct
gatgtgagctattatgtacggccgccaacgccgctggatcgcgaggcgcgcaatcgcggc
acgtcggtttacttcccgtcacaggttgtcccaatgttgccggaggtgctctccaacggt
ctgtgttcgctaaacccgcaggttgacaggctgtgtatggtctgtgaaatgaccatctcg
gcaaaaggtcggctgaccggctacaaattctatgaagcggtgatgagctcccatgcgcgt
ctgacctataccaaagtctggcatatgctgcagggcgatcaggatctgcgtgaacaatat
gcgccgctggtgaagcatattgaagagctgcacaacctctacaaagtgctggataaagcg
cgtgaagagcgcggggggatctcgtttgagagcgaagaggcgaagtttatctttaacgcc
gaacgtcgcattgagcgtatcgaacagacccagcgtaatgacgcgcataagcttatcgaa
gagtgcatgatcatggcgaatatctcggcggcgcgctttgtcgaaaaagctaaagagccg
gcgctattccgtattcatgataagcccaccaccgaagcgatcacctcattccgttccgta
ctggcggagctgggattggagctgccgggcggaaataaaccggaaccgcgcgattatgcc
gaactgcttgaatcgattgccgaccggccggacgccgaaatgctgcaaactatgctgctg
cgttcaatgaagcaggcgatttacgatccggaaaaccgcgggcactttggcctggcgttg
cagtcttatgcgcactttacctcgccgattcgccgctatccggatctttctttgcaccgc
gccattaagtacctgctggcgaaagagcaagggaacaagggcaacaccacagaaacgggc
ggttatcactactcgatggaagagatgttgcagctcggccagcactgttcgatggcggaa
cgccgcgctgatgaagcgacgcgtgatgtctccgactggctgaaatgtgactttatgctg
gatcaggtaggcaacgtctttaagggcgtgattgccagcgtcaccggtttcggcttcttt
gtccgtcttgatgaactgtttatcgatgggctggtacacgtttcctcactggataacgat
tactatcgcttcgatcaggtagggcaacgtctgattggcgagtccggcgggcagacatat
cgcctgggcgaccgggtcgaggtacgcgtcgaagcggtgaatatggacgaacggaaaatt
gactttagcttgatctccagcgagcgcgcaccgcgtaacgtcggcaaaacggcgcgtgaa
aaagcgaaaaaaggtgaaagtaaaaacgccggtaaacgtcgtcaggtaggtaaaaaagtt
aacttcgagcctgatagcgccttccgcggcgagaaaaaagcgaagccgaaagcagcgaag
aaagatgcgagaaaagcaaaaaagccatcggctaaaacgcagaaaatagccgcagcgacc
aaagcgaagcgtgcggcgaagaaaaaagcggcagagtga
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integrated database retrieval system
