Salmonella enterica subsp. enterica serovar Javiana: CFSAN001992_07435
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Entry
CFSAN001992_07435 CDS
T02479
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
senj
Salmonella enterica subsp. enterica serovar Javiana
Pathway
senj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
senj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFSAN001992_07435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
senj03400
]
CFSAN001992_07435
DNA repair and recombination proteins [BR:
senj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFSAN001992_07435
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CFSAN001992_07435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
UB2H
AAA_30
IF2_N
AAA_22
SBDS_domain_II
Motif
Other DBs
NCBI-ProteinID:
AGF81803
LinkDB
All DBs
Position
complement(1453015..1455036)
Genome browser
AA seq
673 aa
AA seq
DB search
MSKPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQ
YTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPR
YTIYPKTHYVTPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDEVVDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG
QNIVKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRD
QLHQLRELFIAAS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaccgttcaaactgaattccgcttttaaaccttctggcgatcagccggacgct
atacgtcgtctggaagaagggctggaggacgggctggcgcatcagacgttattgggcgtg
accggttccgggaagacattcaccattgccaacgtcattgcggacttgcagcggccaacg
atggtgcttgcgcccaataaaaccctggcggcgcagctctacggcgaaatgaaagagttt
ttcccggaaaacgcggtggagtatttcgtctcctactatgactactatcagccggaagcg
tatgtgccaagttcggatacgtttatcgaaaaagacgcttcggtaaacgaacatattgag
caaatgcggttgtcggcaacgaaagcgttgcttgagcgacgcgatgtcgtggtggtggct
tccgtgtccgcgatttacggtctgggcgatccggatctctacctgaaaatgatgctgcat
ctgacggtgggaatgctgattgaccagcgcgcgattttgcgtcggctggcggaattgcaa
tacacccgtaacgatcaagcttttcagcgtggtacctttcgcgtgcgcggcgaagtgatc
gacatcttcccggctgaatctgacgatatcgcgctacgcgttgagctgtttgatgaagaa
gtggaacgcctgtcgctgttcgacccgttaaccgggcaggtagagtcaacggtgccacgt
tataccatctatcccaaaacgcactacgtgacgccgcgcgagcgtattctgcaggcgatg
gaagagataaaagatgagctggcggacaggcgtaaggtcttgctggcaaataataagctg
cttgaagagcagcgattaagccagcgcacgcagttcgatttagagatgatgaacgagctg
ggctactgctcaggcattgaaaactattcccgctttctgtcgggccgcgggccgggcgaa
ccgccgccaaccttgttcgattatctgcccgccgacggactgctggtggtggatgagtct
catgtcaccatcccgcagataggcggcatgtatcgcggcgaccgggcgcgcaaagagacg
ctggtcgagtatggcttccgtctgccttcggcgctggataaccgtccgctgaagtttgag
gagtttgaagccttagcgccgcaaactatctatgtttccgccacgcccggcaactatgag
ctggaaaaatctggtgatgaggtggtggatcaggtcgtgcgaccgaccgggctgctggac
ccgattattgaagtgcgtccggtggcgacccaggtggacgatctgctgtccgaaattcgt
cagcgtgcggccattaatgagcgtgtccttgtcactacgctcaccaaacggatggcggaa
gatttgaccgaatatctggaagagcacggcgagcgcgtgcgttacctgcactcagatatt
gataccgtggagcgcatggaaatcatccgcgatttgcgtctgggcgagtttgacgttctg
gtggggattaacctgctgcgcgaagggctggatatgccggaagtctcgctggtggcgatt
ctggacgctgacaaagaagggttcctgcgctccgagcgctccctgattcagaccatagga
cgcgcggcgcgtaacgttaacggtaaagcgattctgtatggcgataaaatcacgccgtcg
atggcgaaggcgattggcgaaaccgagcgacgtcgcgagaagcagcagaagtacaacgaa
gagcacggtatcacgccgcaggggctgaacaaaaaagtggtcgacatcctggcgctgggg
cagaacattgtgaaaaccaaagcgaaggggaaaggcaagggccgttctacggcaaaagcc
ggaattgtcgaactggatatgacgccgaaagcgttgcagcagaaaattcatgaactggaa
gggcaaatgatgcagcacgcgcaaaatctggagtttgaagaagccgcgcaaattcgcgac
cagttgcaccagttacgcgagttgtttatcgcggcgtcctga
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integrated database retrieval system
