Seonamhaeicola sp. S2-3: BWZ22_07600
Help
Entry
BWZ22_07600 CDS
T04683
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
seon
Seonamhaeicola sp. S2-3
Pathway
seon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
seon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BWZ22_07600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seon03400
]
BWZ22_07600
Enzymes [BR:
seon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BWZ22_07600
DNA repair and recombination proteins [BR:
seon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BWZ22_07600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
UB2H
Motif
Other DBs
NCBI-ProteinID:
APY11115
UniProt:
A0A1U7DRJ9
LinkDB
All DBs
Position
1625612..1628950
Genome browser
AA seq
1112 aa
AA seq
DB search
MSSSNLSQVYEQALQMQNLQNSIVNTQSKIHLKGLVGSLFSYVISASFKSAEKPFLLVFN
DKEEAAHYLNDLEQLINEKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAI
IVTYPDALFEKVVTRRELERNTLKVAVGDNLSIDFVNEVLFEYKFKRVDFVTEPGEFSVR
GGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVESQLSKEQLKKISIIPNVANKFLEESRQ
SFLKYIAQKTVVCLKNADLCFSRIDDFFAKAEETFKELSSELKHDEPEELFCNSALLKKQ
LLEFSIIEFGTQSVFSKGHEISFNSSPQPAFNKQFNLLIEDLNTNHNKGYSNYIACVSEQ
QAKRFHDIFEDVEEDVHYKTIVQSLHQGFVDHDNKIVCYTDHQIFERYHKFHIKNGYAKK
QAITLKELTNLDVGDYVTHIDHGIGRFGGLQKIDVEGKKQEAIKLIYGERDVLYLSIHSL
HKITKYNGKDGKPPKIYKLGSAAWKNLKQKTKARVKHVAFNLIKLYAKRKTKKGYQYNPD
SYMQHELEASFIYEDTPDQSTATADIKADMESERPMDRLVCGDVGFGKTEVAIRAAFKAV
DNGKQVAVLVPTTILAYQHSRTFKKRLQDFPVVVDYLNRFRTAKEKRLTLEALEQGKVDI
IIGTHQLVNKNVKFKDLGLLIVDEEQKFGVAVKEKLKTIKENVDVLTLTATPIPRTLQFS
LMAARDLSVITTPPPNRYPIESHVIRFNEETIRDAISYEIQRGGQVFFIHNRIENIKEVA
GLVQRLVPDAKVAIGHGQMDGKKLEQLMLSFMNGEFDVLVSTTIIESGLDVPNANTIFIN
NANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDDARKRISALEQFTELGSGFNIA
MKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFKDLYNESDTDKVYVK
DVTIDTDFELLFPDSYVNNIAERLSLYTKLNELKTEAELNQFEKELIDRFGALPEQVTDL
LNSVQIKWIATQIGFEKIIMKQGKFVGYFISDQQSSFYQSKWFTKVLQYVQANSHLCKMK
EKQTRKGLRLLLTFDNVKSVEKALKLLKPIVA
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcttcaaatctctcgcaagtttatgaacaggctttgcaaatgcaaaatctgcag
aattctattgttaatactcaaagtaaaattcatttaaaagggcttgttggatctttattt
tcttatgtaatttcagcatcatttaaatctgcagaaaaaccctttttgttggtttttaat
gataaagaagaagcggcacattacttaaatgatttagagcagcttattaatgaaaaagat
gtgctgttctaccccggtagttatcgtaggccttaccaaattgaagagaccgataatgct
aacgtattgttacgtgcagaggttttaaaccgaataaactctcgtaaaaaaccagcaata
atagttacctatccagacgctctttttgaaaaagttgttactagacgcgagttagaacga
aacaccctaaaagtagccgtaggagataacctttctatagattttgtaaacgaagtgttg
tttgaatataaatttaaacgtgttgattttgttacagaaccaggagagttttcggtacgc
ggcggtattgttgatgtgttttcgttttcgcatgatgaaccttatcgtatagagtttttt
ggtgatgaggtagatagtattagaacctttgatgttgagtcgcaactatcaaaagagcag
ttaaagaagattagtatcatccctaatgttgctaataaatttttagaagaaagcagacaa
agctttctaaaatatatagcacaaaaaacggtggtatgcttaaaaaatgccgacttatgt
ttttctagaattgatgatttttttgccaaagcagaagaaacatttaaagaactgtcatca
gaattaaagcatgatgaacccgaagaactattttgcaattcagcattattaaaaaagcaa
ttattagagttttcaattatagagtttgggactcagagtgtgtttagtaaaggccatgaa
attagctttaattcttcaccacaacccgcttttaacaaacaattcaatcttttaattgaa
gatttaaataccaatcataataaaggttactctaattatatagcttgtgttagtgaacaa
caagcaaaacgatttcatgatatttttgaagatgtagaagaagatgttcattataaaacc
atagtacaatcattacaccaaggttttgtagaccatgataataaaatagtttgttacaca
gatcatcaaatttttgagcgttaccataaattccatataaaaaatggctatgctaaaaaa
caagccataactttaaaggaactcacaaatttagatgtaggcgattatgtaacccatata
gatcatggtattgggcgttttggtgggctgcaaaaaattgatgttgaaggcaaaaaacaa
gaagccattaaacttatttacggagagcgcgatgtactctacttaagcattcactcatta
cacaaaataactaagtataacggtaaagatggtaaaccacctaaaatatataaactagga
agtgctgcctggaaaaatttaaagcaaaaaaccaaagctcgtgtaaaacatgtagcgttt
aatttaattaaactctacgcaaagcgaaaaactaaaaaaggctatcaatacaacccagat
agttatatgcagcatgagttggaagcttcttttatatatgaagatactccagaccaaagc
accgcaacagccgatattaaagctgatatggaaagcgagcgtcccatggatagattggtt
tgtggtgatgttggttttggtaaaaccgaagtggctatccgcgcagcttttaaagcggta
gataacggtaaacaagtggctgttttggtacctactactattttagcatatcagcattca
agaacgtttaaaaaacggttacaagatttccctgttgttgttgattacctaaatagattt
agaactgctaaagaaaaacgtttaacactagaggctttagagcaaggaaaagtagatatc
attattggtacccatcaactagtaaataaaaatgttaagtttaaagatttaggacttctt
attgtagatgaagagcaaaaatttggcgttgcagtaaaagaaaaattaaaaactattaaa
gaaaatgttgatgtacttacactaacagcaactcctattccgcgtacgctgcagtttagc
ttaatggctgctagagatttatcagtaattaccacgccacccccaaacagatatcctatt
gaaagtcatgtaatcagatttaatgaagaaactataagagatgctattagttatgaaatt
caacgtggcggacaagtgtttttcattcacaatcgtattgaaaacattaaagaagttgcc
ggattagtacaacgtttagttccagatgctaaggttgctatagggcacggacaaatggat
ggtaaaaaactagagcaacttatgttgtcatttatgaacggagagtttgatgtgctagta
agtaccaccattatagaaagcggtttagatgtgcctaatgcaaacaccatttttataaat
aatgccaataattttggattgagtgatttacatcaaatgcgcggacgcgtagggcgtagt
aataaaaaagctttttgttatttcattaccccagaatactctgctatgacagatgatgct
cgtaaacgcatatcggcattagaacaatttacagaacttggtagcggttttaatatagcc
atgaaagatttagaaattcgtggagctggagatttacttggtggtgaacagagcggattt
ataaatgaaataggttttgatacctatcaaaaaatattaaacgaagctattgaagaactt
aaagaaaatgagtttaaagatttgtataacgaatctgatacagacaaagtttatgtaaaa
gacgttaccattgataccgattttgaattgcttttccctgatagttatgtaaacaacatt
gcagaacgcttaagtctttatactaaattaaatgagttaaaaaccgaagcagaattaaat
caatttgaaaaagaattaatagatagatttggagcattaccagaacaagtgaccgattta
ctaaatagtgtccaaataaaatggattgctacccaaataggctttgaaaaaattattatg
aaacaaggtaagtttgttggctattttattagcgatcagcaaagtagtttttatcaaagc
aaatggtttaccaaagtattgcaatacgtacaggcaaactctcatttatgtaaaatgaaa
gagaaacaaacacgcaaaggcttacgattattgcttacttttgataatgtaaaatcagta
gaaaaagctttaaaattattaaaacccattgtggcttga
DBGET
integrated database retrieval system
