Prodigiosinella confusarubida ATCC 39006: Ser39006_016335
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Entry
Ser39006_016335 CDS
T05290
Name
(GenBank) ATP-dependent helicase
KO
K19789
DNA repair protein RadD
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sera03400
]
Ser39006_016335
DNA repair and recombination proteins [BR:
sera03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
Ser39006_016335
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
AAA_30
SWI2_SNF2
zinc_ribbon_2
zf-tcix
AAA_16
AAA_22
SLFN-g3_helicase
zf-ribbon_3
UPF0547
Motif
Other DBs
NCBI-ProteinID:
AUH05565
UniProt:
A0A2I5T9M7
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All DBs
Position
3580978..3582738
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AA seq
586 aa
AA seq
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MSFTLRPYQQDAVTATLDYFRRHTTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE
LVAQNHEKYCALGLEADIFAAGLQQRQSQGKVVFGSVQSVARNLALFEQAFSLLIIDECH
RVSDDDTSQYQQIIHHLQQSNAQLRLLGLTATPYRLGKGWIYQYHYHGMIRGDEHCLFRD
CIYELPLRYMIKHAFLVPPQRLDMPVVQYDFSQLSARSNGLFSEEDLNRELKRQQRVTPQ
IIHQIVEYAADRNGVMIFAATVEHAGEIERLLPDGQAALISADTPAARRDALIEAFKQQQ
LRYLVNVAVLTTGFDAPHVDVIAILRPTESVSLYQQIVGRGLRLSAGKTDCLILDYAGNP
HDLYTPEVGKRKPHSDSQPVQVFCPQCGFANLFWGKCTDDGTVIEHYGRRCQGWSEDEDG
RRQQCDYRFRFKTCPHCGAENDIAARRCHQCEEILVDPDDMLKAALKLKDALVLRCSGMS
MVYGLDAKGEWLNITYHDEDGAEVSERFRLQTPAQRHVFQIHFLRVHLRAPGIPFHWQTA
AEITQQQPLLRAPDFVVARQQGKFWQVREKIFDYQGRYRRANELRG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttacactgcggccctatcaacaagatgccgtaaccgccaccctcgactacttt
cggcgccacaccacacccgccgtgatcgttctgcctaccggcgcggggaaaagtctggtg
atcgccgaactggcccggttggcccgtggccgcgtgttggtactggcgcatgtcaaagag
ctggtagcgcagaaccacgaaaaatactgtgccctggggctggaggccgacatctttgcc
gccggactgcaacagcgacagagtcagggcaaggtggtttttggcagcgtacagtcggtc
gcccgcaatctggccctatttgaacaggctttttcattactgattattgatgaatgccac
cgggtcagtgacgacgataccagccaataccagcagattattcatcatctccaacaatcc
aatgcacaattgcgtttgttgggactaaccgctacaccctatcgtctgggaaaaggctgg
atctatcaataccactaccacggcatgatccggggtgatgagcactgcctgttccgggac
tgcatttatgagttaccgctacgctacatgatcaagcacgcttttctggtaccgccccag
cgtctggatatgccagtagtacagtatgatttcagccagttgagcgctcgcagtaacggt
ttattcagcgaggaagaccttaaccgtgaattgaaacgtcaacaacgggttacaccacaa
attatccaccagattgtcgaatatgccgccgatcgtaacggggtgatgatttttgccgcc
acggtggaacatgccggagagattgaacgtttgctgcctgatggccaggccgcgcttatc
agcgcagatacaccagcagccagacgtgatgcgctgattgaagcttttaaacagcaacaa
ttgcgctatctggtcaatgtcgccgtattaaccaccggttttgatgctcctcacgtagac
gttatcgctattctgcgcccgaccgaatccgtcagcctctatcagcagatcgtcggacgc
ggtttgcgattgtctgcgggaaaaaccgattgcctgattctcgactacgccggtaatcca
cacgacttgtatacgcccgaagtcggcaagcgtaaaccgcatagcgatagccagccggta
caggtgttctgtccacagtgcggctttgccaatctgttctggggcaaatgtaccgacgac
ggcaccgtgattgaacactacgggagacgctgtcaggggtggagtgaggatgaggatggc
cgccgtcaacaatgtgattaccgctttcgcttcaaaacctgcccgcactgcggagcagaa
aatgatattgccgcccgccgttgccatcaatgtgaagaaatactggtagacccagacgac
atgctgaaagcggcgctaaagctgaaagacgcgctggtactgcgttgcagtggtatgagc
atggtttatggcctggatgccaaaggcgaatggttgaacatcacctatcatgatgaagat
ggtgctgaagtcagtgagcgttttcgcttacagacaccggcccagcggcacgtttttcag
atccatttcctacgagtccatctgcgtgcgcccggtattcccttccactggcagaccgcc
gccgagatcacgcagcaacagccgctactgcgggctcctgattttgttgtcgcacgccaa
caaggcaaattctggcaagtgcgggaaaaaatattcgactaccagggccgctaccgcaga
gcgaatgaactgcgcggctga
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