Serratia sp. FS14: L085_18660
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Entry
L085_18660 CDS
T03313
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
serf
Serratia sp. FS14
Pathway
serf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
serf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L085_18660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serf03400
]
L085_18660
Enzymes [BR:
serf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L085_18660
DNA repair and recombination proteins [BR:
serf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L085_18660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIA49141
LinkDB
All DBs
Position
4066846..4070319
Genome browser
AA seq
1157 aa
AA seq
DB search
MSTSDSRNRSSSPRYSLPERAGDLRQLGQLTGAACAVECAEIVERHPGPVMLIAPDMQNA
LRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISDRLSSLYHLPTMARGVIILPVNT
LMQRVCPHEFLHGHALVMKKGQRLSRDKLRTQLEQAGYRSVDQVMEHGEFATRGALLDLY
PMGSDEPYRIDFFDDEIDSLRIFDVDTQRTLSEVEAINLLPAHEFPTDKNAIELFRSQWR
EQFEVRRDAEHIYQQVSKSAWPAGIEYWQPLFFSQPLPSLFSYLPANTLIVNTGDLEGAA
ERFWQDVNQRYESRRVDPMRPLLAPDTLWLRVDALFGELKAWPRIALKTDELPAKAGNTN
LDYHALPDLAVQAQHKSPLDNLRRFIEGFDGSVIFSVESEGRRETLQDLLGRIKLAPALI
QRLDQAETAGRYMMVGAAEHGFLDGLRQRALICESDLLGERVSRRRQDNRRTINTDTLIR
NLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGEDKLYVPVSSLHLISRY
AGGADENAPLHKLGGDAWTRARQKAAERVRDVAAELLDIYAQRAAKAGFAFKHNREQYQL
FCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQV
AVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVLDDAAEGKVDIIIGTHK
LLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLAEL
VPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFG
LAQLHQLRGRVGRSHHQAYAYLLTPNPKAMGTDAHKRLEAIASLEDLGAGFALATHDLEI
RGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPSLEDLTSNQTEVELRMPALL
PEDFIPDVNTRLSLYKRIASAKNDGELDELKVELIDRFGQLPDAARNLLQCAALRLHAQK
LGIKRIESNERGGFIEFGDNNRVDPGYLIGLLQGNPQVYRLDGPSKLKFTLDLADRQKRL
AFTEELLNAFREHTLAV
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttccgatagccgtaaccgttcctcatccccccgttattctctgcccgaacgc
gcgggcgatctgcgccagctggggcaactgaccggcgcggcctgcgccgtggagtgcgcc
gagatcgtcgagcgccaccctggcccggtgatgctgatcgcgccggatatgcaaaacgcc
ctgcggctgcgcgacgagatccagcagttcaccgatcagatggtgaccacactgtccgac
tgggaaaccctgccgtacgacagcttctcgccgcatcaggaaatcatctcggatcgtttg
tcgagcctgtatcacctgccgaccatggcgcgcggcgtgatcattctgccggtcaacacc
ctgatgcagcgcgtctgcccgcacgaattcctgcacggccacgcgctggtgatgaagaaa
ggccagcgcctgtcgcgcgacaagctgcgcacgcagctggaacaggccggttaccgcagc
gtcgatcaggtgatggagcacggcgaattcgccacccgcggcgcattgctcgatctttat
ccgatgggcagcgatgagccttaccgcatcgacttcttcgatgacgaaatcgacagcctg
cgcatcttcgacgtcgatacccagcgcacgctgagcgaagtcgaggccatcaatctgttg
ccggcccacgagtttcccaccgacaagaacgccatcgagctgttccgcagccagtggcgc
gagcagtttgaggtgcgtcgcgacgccgagcacatctatcagcaggtcagcaaaagcgcc
tggcccgccggtatcgaatactggcagccgctgttcttcagccagccgctgccgtcgctg
ttcagctacctgccggccaatacgctgatcgtcaataccggcgatctggagggcgccgcc
gagcgcttctggcaggacgtcaaccagcgttacgaaagccgccgcgtcgatccgatgcgc
ccgctgctggcgccggatacgctatggctgcgcgttgacgcgctgttcggcgagctgaaa
gcctggccgcgcatcgcgctgaaaaccgatgagctgccggccaaggccggcaataccaat
ctggattaccatgccctgcccgatctggcggtgcaggcgcagcataaatccccgctggat
aatctgcggcgctttatcgaaggcttcgacggcagcgtgattttctccgtcgagagcgag
gggcggcgtgaaacgctgcaggatctgctcggccgcatcaagctggcgccggcgctgatc
cagcgtctcgatcaggcggaaaccgcgggccgttacatgatggtcggcgccgccgaacac
ggcttcctcgacggcctgcgccagcgtgcactgatctgcgaaagcgatctgctcggcgag
cgcgtcagccgccgccggcaggacaaccggcgcaccatcaacaccgatactctgatccgc
aacctggcggagctgcatcccggccagccggtggtgcacctggagcacggcgttggccgc
tatgtcggcctgaccacgctggaagccggcggcatcaaggctgaatacctgatcctctcc
tacgccggtgaggacaagctgtacgtaccggtgtcttcgctgcatctgatcagccgctac
gccggcggcgcggatgaaaacgctccgttgcacaaactgggcggcgacgcctggacacgc
gcgcggcaaaaagcggccgaacgggtgcgcgacgtcgcggcggagctgctggatatttac
gcccagcgcgccgccaaggccggtttcgccttcaagcataaccgcgaacaataccagctg
ttctgccagagcttcccgttcgaaaccacgccggatcaggaacaggcgatcaacgcggtg
ctgagcgacatgtgccagccgctggcgatggaccgcctggtgtgcggcgacgtcggcttc
ggcaaaaccgaagtggcgatgcgcgccgccttcctggcggtggaaaacggcaagcaggtg
gcggtgctggtgccgaccaccctgctggcgcagcagcacttcgacaacttccgcgatcgc
ttcgccacctggccgatccgcatcgagatgatgtcgcgcttccgcagcgccaaagagcag
cagcaggtgctggacgacgcggctgagggcaaagtggacatcatcatcggcacccacaaa
ctgctgcagagcgatctgcgctggaaggatttggggctgctgatcgtcgatgaagaacac
cgctttggcgtgcgccacaaggagcgcatcaaagcgatgcgcgccgacgtcgatatcctg
acgctgaccgccacgccgatcccgcgtacgctgaacatggcgatgagcggcatgcgcgat
ctgtcgatcatcgccactccgccggcgcgccggctggcggtgaagaccttcgtgcgcgaa
tacgacagtctggtggtgcgcgaggcgatcctgcgcgaagtgctgcgcggcggccaggtt
tactacctctacaacgacgtggaaaacatcgagaaagcggcgcaacgcctggctgagctg
gtgccggaggcgcgcatcgccatcggtcacggtcagatgcgcgaacgcgatctggaacgg
gtgatgaacgatttccaccaccagcgcttcaacgtgctggtgtgcacgaccatcatcgaa
accggcatcgatatccccagcgccaacaccatcatcatcgagcgggccgatcgcttcggc
ctggcgcagctgcaccaactgcgcggccgcgtcgggcgttcgcaccatcaggcttacgcc
tatctgttgacgccaaacccgaaagccatgggcaccgacgctcataaacggctcgaggcc
atcgcgtcgctggaagatctcggcgccggtttcgcgctggcgactcacgatctggagatc
cgcggcgccggcgaactgctgggcgaagaccagagcggccagatgaccaccgtcggcttc
tcgctctatatggagctgctggaaagcgccgtcgacgcgttgaaaaacggccgcgaaccg
tcgctggaagatctcaccagcaaccagaccgaggtagagttgcgcatgccggcgctgctg
ccggaagatttcattcccgacgtcaatacccgcctgtcgctgtataagcgtatcgccagc
gcgaagaacgacggtgagcttgacgagctgaaggtcgagctgatcgaccgcttcggtcaa
ctgccggatgcggcgcgcaatctgttgcagtgcgcggcgctgcgcctgcacgcgcagaaa
ctggggatcaaacgcatcgagagcaacgagcgcggcggctttatcgagttcggcgacaac
aaccgcgtcgatccgggttatctgatcggcctgttgcagggcaatccgcaggtttaccgc
ctggacggcccgagcaagctgaagttcacgctcgatctggccgatcgccaaaaacgcctg
gcgttcaccgaagagctgctgaacgccttccgcgaacacacgctggcggtctga
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