Serinicoccus hydrothermalis: SGUI_1335
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Entry
SGUI_1335 CDS
T04436
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
serj
Serinicoccus hydrothermalis
Pathway
serj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
serj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SGUI_1335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serj03400
]
SGUI_1335
Enzymes [BR:
serj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SGUI_1335
DNA repair and recombination proteins [BR:
serj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SGUI_1335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANS78731
UniProt:
A0A1B1NBD4
LinkDB
All DBs
Position
complement(1477577..1481224)
Genome browser
AA seq
1215 aa
AA seq
DB search
MSLAPLLAALRPQAQVSSVLESAAAGMPALEVSAAPGLHPSLVALLASAEGSGPVLAVTA
TGREADDLVGMLGELLPQGPDVVAGFPSWETLPHERLSPRSYTVGHRLATLRRLAHPDRT
GEDPLAGPVQVVVASVRALLQPLVQGLGDLVPVRLAAGDERPPTEVVEALAAAAYTRVDM
VERRGEFAVRGGILDVFPPTEEHPVRVEFWGDTVEEVRWFKVADQRSLEIAGHGLYAPPC
REVLLTDAVRARAAELVDTLPGAGDLLAKIAEGIAVEGMESLAPALVDGMETLVDVLPEA
ARVVVLDPERVRTRAHDLVRTSEEFMQAGWAAAAGGGAAVPIDLQQLLGTASSWSLADMR
RHALDAGVPWWSVSAFAADESLEEFVEGDEAAAEDEDEGTDRVPVVSVPSTPAAAYRSDV
DALTADLRGWLEQGRPVVLALDGAGLARRVGEVLAEREVPNRVHDGADGLPETVDPQRVL
VTTGRVGRGFVLDDDGLVLLGETDLTGNQGAGGSTKDMRRMPSRRRQQVDPLQLRPGDFV
VHEQHGVGRFVEMAQRQVQGATREYVVLEYAASKRGQPGDRLFLPTDQLDQLTKYVGGEA
PTLHRLGGADWQKTKSRARRHVRQIAAELIRLYSARQATQGHAFGPDSPWQRELEDAFAY
AETPDQLVSIDEVKEDMEKTVPMDRLISGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTT
LLVQQHLQTFAERYAQFPVVVRALSRFQSDKEAREVIAGIADGSVDLVIGTHRLLGSTVR
FKDLGLVIIDEEQRFGVEHKEQLKALRTNVDVLAMSATPIPRTLEMAITGIREMSTLATP
PEERHPVLTFVGSYDEKQIAAAIRRELLREGQVFFVHNKVSSIEKVASRLRDLVPEARIE
TAHGQMGEHRLEQVVVDFWERRFDVLVCTTIVETGLDISNANTLIVDRADAFGLSQLHQL
RGRVGRGRERAYAYFLYPPEKPLTETAVDRLQTIAAHTDLGAGMAVAMKDLEIRGAGNLL
GGEQSGHIEGVGFDLYVRLVGEAVAAFKGEGKEAPPEVKIELPVDAHLPHDYVPGERLRL
EAYRKLAQVAEEAELEQIREELVDRYGTPPPPVATLLEVARLRTVARAAGISDIALQGKV
VRFAPVENLRESQQLRLTRVYKGTIIKPALRQILVPAPKTAPVGGKPLRDQEILDWASQL
IHAVLLDDFAPVGAG
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcgccccgctgctcgccgccctgcgcccccaggcgcaggtctcctccgtgctg
gagtccgccgcggccggtatgcccgccctggaggtctccgccgcccccgggctgcacccg
agcttggtggccctgctggcctccgccgagggctcgggcccggtcctggcggtgacggcg
accgggcgggaggcggacgacctcgtgggcatgctcggcgagctgctcccgcaggggccg
gacgtggtcgccggcttcccgagctgggagaccctgccccacgagcggctcagcccgcgc
tcctacaccgtcgggcaccgcctggccacgctgcgccggctcgcccacccggaccgcacc
ggcgaggacccgctcgccgggccggtgcaggtcgtcgtcgccagcgtgcgcgccctgctg
cagcccctcgtccaggggctcggcgacctcgtgccggtccggctcgccgccggcgacgag
cgcccgccgaccgaggtggtcgaggcgctggcggccgcggcatacacccgggtcgacatg
gtcgagcgccgcggcgagttcgcggtgcgcggcggcatcctcgacgtcttcccgcccacc
gaggagcacccggtgcgcgtcgagttctggggcgacaccgtggaggaggtgcgctggttc
aaggtcgccgaccagcgcagcctggagatcgccgggcacgggctgtatgccccgccgtgc
cgcgaggtgctgctcaccgacgccgtgcgtgcgcgggccgccgagctggtggacaccctc
cccggtgcgggcgacctgctcgccaagatcgccgagggcatcgccgtcgagggcatggag
tcgctggcgccggccctcgtggacggcatggagaccctggtcgacgtgctgcccgaggcc
gcgcgggtcgtcgtgctcgaccccgagcgggtgcggacccgggcgcacgacctggtgcgc
accagcgaggagttcatgcaggccgggtgggccgccgccgcgggcggcggggccgccgtc
cccatcgacctgcagcagctgctcggcacggcctcgtcctggtcgttggccgacatgcgc
cggcacgccctcgacgccggggtgccgtggtggagcgtgtccgccttcgccgcggacgag
tccctggaggagttcgtcgagggcgacgaggcggccgccgaggacgaggacgaggggacg
gaccgggtgcccgtggtgagcgtgccctcgaccccggcggcggcataccgcagcgacgtc
gacgcgctgaccgccgacctgcgcggctggctggagcaggggcgaccggtcgtgctcgcg
ctcgacggggccgggctggcgcgtcgcgtcggcgaggtgctcgccgagcgggaggtgccg
aaccgcgtccacgacggggccgacgggctgccggagacggtcgacccgcagcgggtgctc
gtgacgaccggccgcgtcgggcggggcttcgtgctggacgacgacgggctcgtgctgctc
ggcgagaccgacctcaccggcaaccagggtgccggcggcagcaccaaggacatgcggcgc
atgccctcgcgccgccgccagcaggtggacccgctgcagctgcgcccgggcgacttcgtc
gtgcacgagcagcacggcgtcgggcgtttcgtcgagatggcgcagcggcaggtgcagggc
gcgacccgggagtacgtcgtgctggagtacgccgcctccaagcggggccagcccggtgac
cggctcttcctcccgaccgaccagctggaccagctgacgaagtacgtcggcggcgaggcc
cccacgctgcaccggctcgggggcgcggactggcagaagaccaagtcgcgggcgcgccgg
cacgtcaggcagatcgccgccgagctgatccgcctctactcggcgcggcaggcgacgcag
gggcacgccttcggcccggacagcccctggcagcgcgagctcgaggacgccttcgcctac
gccgagaccccggaccagctggtctcgatcgacgaggtcaaggaggacatggagaagacc
gtgcccatggaccgcctcatcagcggtgacgtgggctacggcaagaccgagatcgcggtg
cgcgcggccttcaaggcgatccaggacggcaagcaggtcgcggtcctcgtgccgaccacg
ctgctcgtgcagcagcacctgcagaccttcgccgagcggtatgcccagttccccgtcgtg
gtcagggcgctgtcccgcttccagtcggacaaggaggcgcgcgaggtcatcgcggggatc
gcggacgggtcggtcgacctcgtcatcggcacccaccggctgctcggctcgacggtgcgc
ttcaaggacctcgggctggtcatcatcgacgaggagcagcgcttcggcgtcgagcacaag
gagcagctcaaggcgctgcggaccaacgtcgacgtgctggcgatgtcggccacgcccatc
ccccgcaccctggagatggcgatcaccggcatccgggagatgtcgaccctggccacgccg
ccggaggagcggcacccggtgctgaccttcgtcggcagctacgacgagaagcagatcgcc
gcggccatccgccgcgagctgctgcgcgagggccaggtcttcttcgtgcacaacaaggtc
agctcgatcgagaaggtcgcctcccgcctgcgcgacctggtgcccgaggcccggatcgag
accgcgcacggccagatgggcgagcaccggctggagcaggtcgtcgtcgacttctgggag
cggcgcttcgacgtgctcgtgtgcacgacgatcgtcgagaccgggctggacatctccaac
gccaacacgctcatcgtggaccgggccgacgccttcggcctctcccagctgcaccagctg
cggggccgggtgggccgtgggcgggagcgcgcctacgcctacttcctctaccccccggag
aagccgctcaccgagaccgcggtcgaccggctgcagaccatcgccgcccacaccgacctc
ggtgccggcatggcggtcgcgatgaaggacctggagatccgtggcgccggcaacctgctc
ggcggcgagcagtccgggcacatcgagggggtgggcttcgacctctacgtccggctggtc
ggcgaggccgtcgcggccttcaagggcgagggcaaggaggcgccgccggaggtcaagatc
gagctgcccgtcgacgcccacctgccgcacgactacgtgccgggggagcggctgcggctc
gaggcataccgcaagctggcgcaggtcgccgaagaggccgagctggagcagatccgggag
gagctggtggaccgctacggcacgccgccgccgcccgtggccacgctgctcgaggtggcg
cggctgcggaccgtggcgcgcgccgcgggcatcagcgacatcgcgctccagggcaaggtg
gtgcgcttcgcgccggtggagaacctgagggagagccagcagctgcgcctcacccgggtc
tacaagggcacgatcatcaagcccgccctgcgccagatcctcgtccccgcgccgaagacc
gccccggtcggcggcaagccgctgcgggaccaggagatcctcgactgggcctcccagctc
atccacgccgtcctgctcgacgacttcgcgccggtcggcgccggctga
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