Serinicoccus hydrothermalis: SGUI_1450
Help
Entry
SGUI_1450 CDS
T04436
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
serj
Serinicoccus hydrothermalis
Pathway
serj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
serj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SGUI_1450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serj03400
]
SGUI_1450
Enzymes [BR:
serj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SGUI_1450
DNA repair and recombination proteins [BR:
serj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SGUI_1450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ANS78846
UniProt:
A0A1B1NBP4
LinkDB
All DBs
Position
1602655..1603503
Genome browser
AA seq
282 aa
AA seq
DB search
MSSQQVSVAGRTLKVSNLDKVLYPATGTTKGEILTYYVTHAEQILPELADRPVTRIRWPE
GVAQAHFFEKNLPSGAPDWLPRVVVPTPGSSRGHTHLTFPLVTDLADLVYLVNLGSLELH
VPQWRIDGDGVPQDPDRLVVDLDPGPGAGLAECSRVALLVRDRLGAVGLEARPVTSGSKG
MQLYAALEGTRSSDEVSAVTKALAESLAEQHPDLVTARMTKAVRPGKVFLDWSQNNGAKT
TICPWSVRGRERPQVAFPRDWDEVEGAAEGDEELVQVLIDEV
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagccagcaggtcagcgtcgccgggcgcacgctcaaggtgagcaacctggacaag
gtgctctaccccgccaccggcacgaccaagggcgagatcctcacctactacgtcacccac
gccgagcagatcctgcccgagctggccgaccggccggtcacccggatccggtggccggaa
ggcgtcgcgcaggcgcacttcttcgagaagaacctcccctccggagcacccgactggctg
ccccgggtcgtcgtccccacgcccgggtcctcgcgcgggcacacccacctgacgttcccg
ctggtcaccgatctggcggacctggtctacctcgtcaacctcggcagcctcgagctgcac
gtgccgcagtggcggatcgacggcgacggcgtcccgcaggacccggaccggctggtggtc
gacctcgacccgggtcccggcgccgggctcgccgagtgctcccgggtggcgctgctggtg
cgcgaccggctgggtgcggtggggctcgaggcgcgcccggtcacgagcgggtccaagggc
atgcagctgtatgccgcgctcgagggcacccggagctcggacgaggtgagcgctgtcacc
aaggcgctggccgagagcctggccgagcagcaccccgacctggtgacggcgcggatgacc
aaggcggtgcggcccgggaaggtcttcctcgactggagccagaacaacggggcgaagacg
acgatctgcccgtggtccgtgcggggcagggagcggccgcaggtggccttcccgcgcgac
tgggacgaggtcgagggcgccgccgagggggacgaggagctcgtgcaggtgctcatcgac
gaggtgtaa
DBGET
integrated database retrieval system
