Serratia sp. MYb239: CLM71_09195
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Entry
CLM71_09195 CDS
T05477
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
serm
Serratia sp. MYb239
Pathway
serm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLM71_09195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serm03400
]
CLM71_09195
Enzymes [BR:
serm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLM71_09195
DNA repair and recombination proteins [BR:
serm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLM71_09195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AVJ17297
LinkDB
All DBs
Position
complement(1928572..1932048)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSISDNRSRSAALTSRYDLPNRAGDLRQLGQLTGSACAVECAEIAERHDGPIMLIAPDMQ
NALRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISARLSSLYHLPTMARGIIILPV
NTLMQRVCPHEFLHGHALVMNKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLD
LYPMGSDEPYRIDFFDDEIDSLRIFDVDTQRTLSEVESINLLPAHEFPTDKNAIELFRSQ
WREQFEVRRDAEHIYQQVSKSSWPAGIEYWQPLFFSQPLPSLFSYLPANTLLVNTGNLES
AAERFWLDVNQRYESRRVDPMRPLLAPDTLWLRVDALFAELKAWPRVALKTEALPAKAGN
TNLDYQSLPDLAVQAQQKAPLDNLRRFIEGFDGSVIFSVESEGRRETLQDLLGRIKLGTS
LIQRLDQADDNGRYMMVGAAERGFLDAMRQRALICESDLLGERVSRRRQDNRRTINTDTL
IRNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGEDKLYVPVSSLHLIS
RYAGGADENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQY
QLFCQTFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK
QVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVLDDAADGKVDIVIGT
HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPARRLAVKTFVREYDSLVVREAILRETLRGGQVYYLYNDVENIEKAAERLA
ELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADR
FGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIATLEDLGAGFALATHDL
EIRGAGELLGEDQSGQMTTIGFSLYMELLESAVDALKQGREPSLEDLTSSQTEVELRMPA
LLPDDFIPDVNTRLSLYKRIASAKHDGELEELKVELIDRFGKLPDATRNLLHSAALRQHA
QTLGIKRIEVNERGGFVEFGEKNRVDPGYLIGLLQSQPQIYRLDGPTKLKFMLDLTDRAK
RLKFIEDLLSACREHTLA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgagcatttccgataaccgtagtcgttccgcagcacttacctcccgctatgacctgccg
aaccgcgcaggggatttacgccagctgggtcagctgaccggttcggcctgcgccgttgag
tgcgccgaaatcgccgaacgccacgacggacctatcatgctgatcgcgccggatatgcaa
aatgccctgcgtctgcgcgatgagatccagcagtttaccgatcagatggtcaccacgctg
tcggactgggaaacgctgccttacgacagcttctcgccgcatcaggagattatctccgcc
cgtctctccagcctgtaccatctgccgaccatggcgcgcggcattattattctgccggtc
aacacgctgatgcagcgcgtctgcccgcatgagttcctgcacggccatgcgctggtgatg
aataagggtcagcggctgtcgcgggataaactgcgcgcccagctggagcaggccggctac
cgcagcgtcgatcaggtgatggagcacggcgagtttgccacccgcggcgccctgctcgat
ctgtacccgatgggcagcgacgaaccgtaccgtatcgatttctttgatgacgaaatcgac
agcctgcgcattttcgacgtcgacactcagcgcacgctgagcgaggtcgagtcgatcaac
ctactgccggcgcacgaattcccgaccgataaaaacgctatcgaactgttccgcagccag
tggcgtgaacagtttgaagtgcgccgcgacgccgaacatatttaccagcaggtcagcaaa
agcagctggcccgccggtatcgaatactggcagccgctgttcttcagccagccgctgccg
tcgctgttcagctatctgccggcgaataccctgctggttaataccggcaacctggagagc
gctgccgagcgcttctggctggatgtcaatcagcgctatgagagccgccgcgtcgacccg
atgcgcccgctgctggcgccggacaccctgtggctgcgcgtcgacgccctgttcgccgag
ctgaaggcctggccgcgcgtggcgctgaaaaccgaggcactgccagccaaagcgggcaac
accaatctcgactaccaaagcctgcccgacctggcggtacaggcgcagcaaaaagcgccg
ctggataacctgcgccgctttatcgaaggttttgacggcagcgtgatcttctcggtggag
agcgagggccggcgtgagacgctgcaggatctgctcggccgcatcaagctgggcaccagc
ctgattcagcggctggatcaggccgacgacaacggccgttatatgatggtcggcgccgcc
gaacgcggcttcctcgatgcgatgcgccagcgggcgctgatttgcgaaagcgacctgctg
ggcgaacgcgtcagccgacgtcggcaggataaccgccgcaccatcaataccgataccctg
atccgcaacctggcggagctgcaccccggccagccggtggtgcaccttgagcacggcgtc
ggtcgctatgtcggcctgaccacgctggaagccggcggcatcaaagcggaatacctgatt
ttgtcctacgccggtgaggacaagctgtacgtgccggtttcctcgctgcatctgattagc
cgctatgccggcggcgccgatgaaaatgccccgctgcataaactcggcggtgacgcctgg
tcgcgggcgcggcagaaagcggcagagaaagtgcgcgacgtcgccgccgaactgctggat
atctacgcacagcgcgcggccaaagccggtttcgcctttaaacacgaccgcgaacagtat
cagctgttctgccagacgttcccgtttgaaaccacgcccgatcaggaacaggcgatcaat
gcggtgctgagcgatatgtgccagccactggcgatggaccgtctggtgtgcggcgacgtg
ggcttcggcaaaaccgaagtggcaatgcgcgccgccttcctggcggtggagaacggcaag
caggtggcggtactggtgcccaccaccctgctggcgcaacagcacttcgacaacttccgc
gaccgtttcgccacctggccaatccgtattgagatgatgtcgcgcttccgcagcgctaaa
gagcaacagcaggtgctggacgacgcggcggacggcaaggttgatatcgttatcggcacc
cacaagctgctgcagagcgatctgcgctggaaagatttggggctgctgatcgtcgacgaa
gaacaccgcttcggcgtacgccacaaagagcgcatcaaagcgatgcgtgccgacgtagat
attctgacgctgaccgcgacgccgatcccgcgtacgctgaatatggcaatgagcggcatg
cgcgatctgtcgattatcgccaccccgccggcgcgccgtctggcggtaaaaacctttgtg
cgcgaatacgacagcctggtggtgcgcgaagcgattctgcgtgagacgctgcgcggcggc
caggtctactacctgtacaacgacgtggaaaacatcgagaaagcagccgaacggctggcg
gagctggtgccggaagcgcgcatcgccattggccacggccagatgcgcgagcgcgatctg
gagcgggtgatgaatgatttccaccaccagcgctttaacgtactggtctgcaccaccatt
attgagaccggcatcgatattcccagcgccaacaccattatcatcgaacgggccgaccgc
ttcggtctggcgcagctgcaccagctgcgcggccgcgtcggtcgttcgcaccatcaggct
tacgcctacctgctgacgccaaatccgaaagcgatgagcagcgacgcccataaacgcctg
gaagccatcgccacactggaagatctgggcgccggcttcgcgctggccacgcacgatctg
gaaatccgcggcgccggcgaactgctgggagaagaccagagcgggcagatgaccaccatc
ggcttctcgctgtatatggagctgctggaaagcgcggtggatgcgctgaaacagggacgg
gagccgtcgctggaggacctgaccagcagccagaccgaggtggaactgcgtatgccggcg
ctgctgccggacgatttcattccggacgtcaacacccgtctgtcgctgtacaaacgcatc
gccagcgccaagcatgacggcgagttggaagaactgaaggtggaactgatcgaccgcttc
ggcaaactgccggatgccacgcgcaatctgctgcacagcgccgcgctgcgtcagcatgcg
cagacgctgggcatcaagcgaattgaggttaacgaacgcggcggctttgtcgagttcggc
gaaaagaaccgcgtcgatcccggttacctgatcggcctgctgcagagccagccgcagatc
taccggctggacggccccaccaagctgaagtttatgctcgatctgaccgaccgggccaaa
cggctgaagtttatcgaggatctgctgagcgcctgccgcgaacatacgctggcgtaa
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