Saccharothrix espanaensis: BN6_34290
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Entry
BN6_34290 CDS
T02404
Symbol
lig
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sesp
Saccharothrix espanaensis
Pathway
sesp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN6_34290 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sesp03400
]
BN6_34290 (lig)
Enzymes [BR:
sesp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN6_34290 (lig)
DNA repair and recombination proteins [BR:
sesp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN6_34290 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CCH30727
UniProt:
K0JZL2
LinkDB
All DBs
Position
3713239..3715365
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AA seq
708 aa
AA seq
DB search
MRACGTFGPEVAMAATSQRGQTGVPAWVEPMLAKADGGRLPSGPAWRYEDKLDGYRCAVR
VAAAGAVALTSRNGLDLTAEFSELVDPIARVFAGRAGVLDGEVVAYDERGRIDFGLLQER
RGRHRRHVDGPHRVDVRFLAFDLLRLGDADLLREPYDERRGLLTSLPMPDPYRVDIVRAI
THDRLRADRLTPEALLRRTADAGYEGLVAKLGSSTYQPGHRSDAWLKHPVTVTTEVVVCG
WRPGKGGLSGSVGGLLLGAHDPVTGDLVYLGDVGTGFSRTQRADLRSALEPLERRTHPFA
AAPPREDVVGARWVEPRLVGEVVYRTFTRGGRLRHTAWRGLREDRGPAEALLPPSAAPRP
APRPVPSPVTTSPVTTSPVTTSPVTASPVTAPDDTPPPTGRLSVRVGDRLLRLSNLDKIL
YPKAGFTKGEVIAYYTAIAPLLLPHLRNRPVTVVRWPDGVDGQSWFAKNTPAGAPDWLRT
VRLTGSGSRGSGDPVEYPLIDDLPALVWAANLAALELHVPQWTVDPQGTPRPPDRLVIDL
DPGEGTTIVDCCRVAERVRDILVADGLTPLATTSGSKGLQLYAAIDTARADAPSAYAKAV
ARLLARESPDTVTAVMAKAQRTGRVLLDWSQNNPAKTTIAPYSLRGRDLPTVATPITWDE
VRACRHPSDLVFTADQAVARAADPGDLPAGLDTTRAPLPTPVAERGKA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggcctgcgggacgttcggaccggaggtcgcgatggccgccacgtcgcagcgcgga
cagaccggtgtgccggcgtgggtggagccgatgctggccaaggcggacggtggccggttg
ccctccgggccggcctggcggtacgaggacaagttggacggctaccgctgcgcggtgcgc
gtcgccgccgccggcgcggtggcgttgaccagccgcaacgggctggacctgaccgccgag
ttcagcgaactggtcgatccgatcgcacgggtcttcgccggccgggccggggtgctcgac
ggcgaggtcgtcgcctacgacgaacgcgggcggatcgacttcgggctgttgcaggagcgc
cggggccgccatcgacggcacgtcgacggaccgcaccgcgtggacgtgcggttcctggcc
ttcgacctgctgcggctgggggacgccgacctgctccgcgagccctatgacgaacgccgc
ggcctgctgacgtcgctgccgatgcccgatccgtaccgggtcgacatcgtccgcgccatc
acccacgaccggctgcgcgccgaccggctcacccccgaggcgctgctccgccgcaccgcc
gacgcgggctacgaagggctcgtcgcgaagctcggcagctcgacctaccagccggggcac
cggtcggacgcgtggctcaaacacccggtgaccgtcacgaccgaggtggtggtgtgcggg
tggcggcccggcaaggggggcctctccgggtcggtgggcggtctgctgctgggcgcgcac
gacccggtgacgggtgacctggtctacctcggcgacgtgggcaccgggttcagccggacc
cagcgcgcggatctgcgcagcgcgctggagccgctggaacggcgtacgcacccgttcgcc
gccgcgccgccgcgcgaggacgtggtcggggcccggtgggtcgaaccgcgcctggtcggc
gaggtcgtgtaccggacgttcacccgtggcggccggttgcggcacaccgcgtggcggggt
ctgcgcgaggaccgcggaccggcggaggccctcctcccgccatccgccgccccccggccc
gccccccggcccgtcccctcacccgtcaccacttcacccgtcaccacttcacccgtcacc
acttcaccggttaccgcctcacccgtcaccgccccggacgacaccccgccgccgaccggg
cggctttccgtccgcgtcggcgaccggctgctgcgactgtccaatctggacaaaatcctc
tacccgaaggccgggttcaccaagggtgaggtgatcgcctactacaccgcgatcgcgccg
ctgctgctgccgcacctgcggaaccggccggtcacggtcgtgcgctggcccgacggtgtc
gacggccagtcctggttcgccaagaacacgcccgccggcgcgcccgactggttgcgcacg
gtccggctgaccgggtccggttcccgcgggtccggcgacccggtcgagtacccgctgatc
gacgacctgcccgcgctggtgtgggccgcgaacctggccgcgctcgaactgcacgtcccc
cagtggaccgtcgacccgcagggcaccccgcgcccaccggaccggctggtgatcgacctg
gaccccggcgagggcaccacgatcgtggactgctgccgcgtcgccgaacgcgtgcgcgac
atcctggtcgcggacggcctcacgccgctggccaccacctccggttccaaagggcttcag
ctctacgccgccatcgacaccgcccgagccgacgcgccctcggcctacgcgaaggcggtg
gcccggttgctcgcccgcgagtccccggacaccgtcaccgcggtgatggccaaggcccag
cgcaccggccgggtgctgctcgactggtcccagaacaacccggccaagaccaccatcgcc
ccctactcgctgcgcggccgcgacctgccgacggtggccaccccgatcacctgggacgaa
gtacgcgcctgtcggcacccctcagacttggtgttcaccgccgatcaggcggtcgcccga
gccgccgatcccggcgacctgccggccggactggacaccactcgcgcgcccctgcccaca
ccggtggccgaacgcggcaaggcgtag
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