Suncus etruscus (white-toothed pygmy shrew): 126011385
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Entry
126011385 CDS
T09902
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03082
ATP-dependent chromatin remodeling
setr04714
Thermogenesis
setr05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
126011385 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
126011385 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
126011385 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
setr03000
]
126011385 (ARID1A)
03021 Transcription machinery [BR:
setr03021
]
126011385 (ARID1A)
03036 Chromosome and associated proteins [BR:
setr03036
]
126011385 (ARID1A)
Transcription factors [BR:
setr03000
]
Eukaryotic type
Helix-turn-helix
ARID
126011385 (ARID1A)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
126011385 (ARID1A)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
126011385 (ARID1A)
BRITE hierarchy
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
126011385
NCBI-ProteinID:
XP_049631107
EnsemblRapid:
ENSSRTG00000026768
LinkDB
All DBs
Position
6:complement(50437430..50541571)
Genome browser
AA seq
2303 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPSELKKAEQPPPPPRPEEAGAEAAAAAAERGEMKAAAGPESE
GPAAGPPPPPPQPPQPPPPGKELPDGAESNGGGGGGPGPGAEPDPKNSNGNAGPRPALNN
NLAEPPGGGGGGVGGDGVGAPPHAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQ
QSPGLAALQSGGGGGGGLEPYAGPPQNSHDHGFPNHQYNSYYPGRGAYPPPPQAYALGSP
RGGGGGGTPGSGAAAAAAAGSKPPPSSSASASAAASASAFVPQRFGAMGGGGPSAPGGGT
PQPTATPTLNQLLTSPSSARGYQGYPGGDYGAGPQDGGAGKGPADMASQCWGAAAAAAAA
AAASGGAQQRSHHAPMSPGSSGGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQ
GPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSTMGGLSYAQQIPPYGQQGPSGYGQQ
GQTPYYNQQSPHPQQQQQAPYSQQPPSQTPHAQSSYQQPPQSQPPQLQSSQAPYSQQSSQ
PPHQQSPTPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQSQS
QQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDLNLSLQSRPSSLPDLSG
SIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPA
SVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYIQRNPQMPQYSS
PQPGSALSPRQPSGGQMHTGMGSYQQNSMGSYGPQGAQYGPQGGYPRQPNYNALPNANYP
SAGMAGSMNPMGAGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMC
PPPGSMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQ
GPPYPMGGTMANNSAGMAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTT
NEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGL
TQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSK
KSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMRSNSV
GIQDAFPDGSDPTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYSSMRKAPGSDPF
MSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGAPYDRVRTEPGIGPEGNMGTGAP
QPNLMPSNPDSGMYSPSRYPPQQQQQQQQQQRHDSYGNQFSTQGTPSSSPFPSQQTTMYQ
QQQQQQNYKRPMDGTYGPPTKRHEGEMYSVPYSTGQGQAQQQQLPPAQPQPSSQQQAAQP
SSQQDVYNQYGNAYPATATAAAERRPAGGPQNQFPFQFGRDRVSAPPGSTAQQNIPPQMM
GGPIQGSAEVAQQGTMWQGRNDMTYNYANRQNTGSAPQGPAYHGVNRTDEMLHTDQRANH
EGPWPSHGTRQPPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSP
SKSPFLHSGMKMQKAGPPVPASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTM
KDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFR
RCLIEIFGILKEYEVGDPGQRTLLDPGRFSKASSPAPVEGEEEEDLLGPNLEEEEEEEVA
ENDEEMAFSGKDKEASENSEEKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLL
HWRIGGGDTTEHIQTHFESKTELLPTRPQGSCPPVPRKHVIAMENMPGTTEQEGPPLDGL
PEKRITATMDDMLSSRSSTLTEEGAKNAEATKESSKFPFSISPAQSHRNIKILEDEPHSK
DETPLCTLLDWQDSLAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHP
ERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICL
PVLDGLLHWAVCPSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFS
RLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDS
LAATQFQQSQASLLHMQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDIS
VSPLMNSLVSQVICDVLFLIGQS
NT seq
6912 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccctcg
gagctcaagaaagccgagcagccgccgccgccgccgcggcccgaggaggcgggggccgag
gcggcggccgccgcggccgagcgcggggagatgaaggcggccgccgggcccgagagcgag
ggccccgccgcgggcccgccgccgccgccgccgcagccaccgcagccgccgccgccgggc
aaggagctgccggacggcgccgagagcaacgggggaggcggcggcggccccggccccggc
gcagagccggacccgaagaactcgaacggcaacgcgggcccgaggcccgccctgaacaat
aacctcgcggagccgcccggcggcggcggcggcggcgtcggcggcgacggggtgggggcg
cctccgcacgcggccgccctgccgccccccgcctacggcttcgggcagccctacggccgg
agcccgtccgccgtggccgccgccgcggccgccgtcttccaccaacaacatggcggacaa
caaagccccggcctggccgcgctgcagagcggcggcggcggcggcggcgggctggagccc
tacgcggggcccccgcagaactcgcacgaccacggcttccccaaccaccagtacaactcc
tactaccccggccgcggcgcctacccgccgcccccccaggcctacgcgctgggctccccg
cgaggcggcggcggcggcggcactccgggctccggcgcggcggcggcggcggccgcgggc
tccaagccgcctccctcgtccagcgcctccgcctcggcggcggcgtccgcgtcggccttc
gtcccgcagcgcttcggggccatggggggcggcggcccgagcgcgcccggcggcggcacc
ccccagcccaccgccactcccaccctcaaccagctgctcacgtcgcccagctcggcccgc
ggctaccagggctaccccgggggcgactacggcgccgggccccaggacgggggcgccggc
aagggcccggcggacatggcctcgcagtgctggggggccgcggcggcggcggcggcggcg
gcggccgcctcgggaggggcccaacaaaggagccaccacgcgcccatgagccccgggagc
agcggcggcggcggggggcagccgctcgcccggaccccgcagccatccagtccaatggat
cagatgggcaagatgagacctcagccatatggcgggactaacccatactcgcaacaacag
ggacctccgtcaggaccacagcaaggacatgggtacccagggcagccatatgggtcccag
accccgcaacggtacccgatgaccatgcagggccgggcacagagtaccatgggcggtctc
tcttatgcacaacagattcctccctatggacaacaaggccccagtgggtatggtcaacag
ggccagactccatattacaaccagcaaagtcctcaccctcagcagcagcagcaagcaccc
tactcccagcaaccaccatcccagacccctcatgctcaatcatcgtatcagcagccacca
cagtctcagccaccacagctccagtcctcccaggctccatattcccagcagtcatcccag
cctccacatcagcagtctcccactccatatccttctcagcagtccacgacccagcagcac
ccccagagccaacccccgtactcacagccacaggcacagtctccctaccagcagcagcaa
cctcagcagccagcatcctcgacgctttcccagcaggctgcataccctcaatcccagtct
cagcagtcacagcaaactgcctattctcagcagcgcttccctccaccacaggagttatct
caagattcatttgggtctcaggcatcctcagccccctcaatgacctccagtaagggagga
caagaagatttgaacctgagtcttcagtcaagaccctcaagcttgcctgatctgtctggt
tcaatagatgatctccctatggggacagaaggagctctgagtcctggagtgagcacatca
gggatatccagcagccaaggagagcagagtaatccagctcagtctcctttctctcctcat
acatcccctcatctgcctggcattcgaggcccttccccatcccctgttggctctcctgcc
agtgttgctcagtctcgctcaggaccactctcgcctgctgcagtgccaggcaaccagatg
ccacctcggccacccagtggccagtcggacagcatcatgcatccttccatgaatcaatca
agcattgcccaagatcgaggttacatccagcggaatcctcaaatgccccaatacagttcc
ccccaacctggctcagccttatctccgcgtcagccttccggaggacagatgcacacaggc
atgggttcctaccagcagaactccatgggaagttatgggccccaaggggctcagtatggc
ccacagggaggctaccccaggcagccaaattataatgccttgcccaatgctaactatcct
agtgcaggcatggctggaagcatgaaccctatgggtgctggaggacaaatgcatgggcaa
cctggcatcccaccttatggcacactccctccagggagaatgagtcatgcctcaatgggc
aatcggccttatggtcctaacatggccaatatgccacctcaggttgggtcagggatgtgc
cccccacccgggagcatgaaccgaaaaactcaagaaactgctgtcgccatgcatgttgct
gccaactctattcaaaacagaccaccaggctatcccaatatgaatcaagggggaatgatg
ggaactggacctccctatggacaagggattaatagtatggctggcatgatcaaccctcag
ggacccccatatcccatgggtggaacgatggccaacaattcagcaggaatggcagccagc
ccagagatgatgggtcttggagatgtcaaattaactccagccacaaagatgaataacaaa
gcagatgggacacccaagacagaatccaaatccaagaaatccagttcctctacgacaacc
aatgagaagatcacgaagttgtatgagctaggtggtgaacctgagaggaagatgtgggtg
gaccgttacctggcattcacggaggagaaggcaatgggcatgacaaatctgcctgctgtg
ggcaggaaacccctagacctctatcgcttgtatgtgtctgtgaaggagattggtggattg
actcaggtcaacaagaacaaaaagtggcgggaacttgcaactaacctcaatgttggtacc
tcaagtagtgccgccagctccttgaaaaaacagtatatccagtgtctctatgcctttgaa
tgcaagattgaacggggagaagacccacccccagatatctttgctgctgctgattccaag
aagtcccagcccaagattcagcctccctctcctgcgggatcagggtctatgcaggggcca
cagacacctcagtcaacaagcagttccatggcagaaggaggagatctaaagccaccaacc
ccagcatccacacctcacagtcagataccacctttaccaggcatgaggagcaattcggtt
gggatccaagatgcctttcctgatggaagtgaccccacattccagaagcggaattccatg
actccaaaccctgggtaccaacccagtatgaatacctctgacatgatggggcgcatgtcc
tatgagccaaataaggatccttacagcagcatgaggaaagctccagggagtgatcccttc
atgtcgtcaggacagggccccaatggtgggatgggggatccttacagccgagctgctggc
cctgggctgggaaatgtggcaatgggacctcgacagcactacccctatggagctccttat
gacagagtgagaacggagcctggaataggacctgagggtaacatggggactggagctcca
caaccgaatctcatgccttccaacccagattcggggatgtattctcccagtcgctaccct
ccacagcagcagcagcagcagcagcaacaacaacgacatgattcctatggcaatcagttt
tccactcaaggcaccccttccagcagccccttcccaagccagcagaccacaatgtatcag
cagcaacagcagcagcagaattacaagcggccaatggatggcacttatggtcctcctacc
aagcgacatgaaggagagatgtacagcgtgccatacagcacggggcaggggcaggcccag
cagcagcagttgccccctgcccagccccagccctccagccagcaacaagctgcccagcct
tcctctcagcaagatgtgtacaaccagtatggcaatgcctatcctgccactgccacagct
gctgctgagcgccgaccagcaggcggccctcagaaccagtttccattccaatttggccga
gaccgtgtctctgcaccccctggctctactgcccagcagaacataccaccacaaatgatg
ggtggtcccatacagggatcggctgaggttgctcagcaaggcactatgtggcagggtcgt
aatgacatgacctacaattacgccaataggcagaacacaggttctgccccccagggccct
gcctatcatggtgtgaaccgaacagatgaaatgctgcacacagatcagagggccaaccat
gaaggtccatggccttcccatggcacacgccaacccccatatggcccatctgctcctgtg
ccccccatgacaaggccccctccatccaactaccagcccccaccaagcatgcagaatcac
attcctcaggtatctagccccgctcccctgccccgtccaatggagaatcgtacctctcca
agcaagtctccattcctgcactctgggatgaagatgcagaaggcaggtcctccagtacct
gcctcacacatagcacctgcccctgtgcaacctcccatgatacggcgggacatcaccttc
ccacctggctctgttgaagccacacaacctgtgttgaagcagaggcggcgactcacgatg
aaagacatcggaaccccagaggcatggcgggtaatgatgtccctcaagtctggattgctg
gcagagagcacgtgggcattagacaccatcaacatcctgctatatgatgacaatagcatc
atgaccttcaacctcagtcagctcccagggttgctagagcttcttgtggaatatttccga
cgttgcctgattgagatctttggcattttaaaggagtatgaggtgggtgacccagggcag
agaacactactggaccctgggagatttagcaaagcatctagtccagcccctgtagagggg
gaagaggaggaagatcttctaggtcctaacctagaagaggaagaagaggaagaagtagct
gaaaatgatgaagagatggccttttctggcaaggataaggaagcctcagagaatagtgag
gaaaaactaattagtaagtttgataagcttccagttaaaattgtgcagaagaacgacccg
tttgtggttgactgctctgataagcttgggcgagtacaggaatttgacagtggcctgctg
cactggcggattggtggaggagacaccactgagcatatccagacccactttgagagcaag
acagagctgctgcctacccggcctcaggggtcctgcccaccagtcccccggaaacatgtc
atagccatggagaatatgccagggacaacagagcaggaggggcccccactagatggcctt
ccagaaaaacggatcacagccactatggatgacatgttgtccagccggtctagcacattg
accgaagagggagctaagaatgcagaagcaaccaaggagagcagcaagtttccattcagc
atcagtccagcacagagccatcggaacatcaagatcctagaggatgaacctcacagtaaa
gatgaaaccccactgtgtacccttctggactggcaggattcccttgccaagcgctgtgtc
tgtgtctccaataccatccgaagcctgtcgtttgtgccaggtaacgactttgagatgtcc
aaacacccagggctgctgctgattctgggcaagctgattctactacatcacaaacatcca
gaacggaagcaggcaccactaacttatgagaaggaggaggagcaggaccaaggggtgagc
tgcaacaaggtagagtggtggtgggactgcttggagatgctccgggaaaacaccttggtc
acgctcgccaacatctcggggcagttggacctctccccatatccagagagcatttgtctg
cctgtcctggatggactccttcactgggcagtctgcccttcagctgaagcccaggaccct
ttctcgaccctgggccccaatgctgtcctctccccccagagactggtcttggaaaccctc
agtaaactcagtatccaggacaacaatgtggacctgatcctggccacaccccccttcagt
cgtctggagaagttgtatagcaccatggtgcgcttcctcagtgaccgaaagaacccggta
tgccgggagatggctgtggtactgttggccaacctggcacagggtgacagcctggcagcc
cgtgccattgcagtacagaagggcagcattggtaacctcttgggcttcttggaggacagc
ctcgctgctacacaattccagcagagccaggctagcctgctccatatgcagaacccaccc
tttgagccaactagtgtggacatgatgcggcgagctgcccgtgcgctgctggccctggcc
aaggtggacgagaaccactcagagttcacgctgtacgaatcacggctgttggacatctcg
gtatcaccattgatgaactcattggtttcacaagtcatttgtgatgtactgtttttgatt
ggccagtcatga
DBGET
integrated database retrieval system
