Suncus etruscus (white-toothed pygmy shrew): 126012043
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Entry
126012043 CDS
T09902
Symbol
USP13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
setr01002
]
126012043 (USP13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
setr04121
]
126012043 (USP13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
setr04147
]
126012043 (USP13)
Enzymes [BR:
setr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
126012043 (USP13)
Peptidases and inhibitors [BR:
setr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
126012043 (USP13)
Ubiquitin system [BR:
setr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
126012043 (USP13)
Exosome [BR:
setr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
126012043 (USP13)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
126012043
NCBI-ProteinID:
XP_049631786
EnsemblRapid:
ENSSRTG00000000620
LinkDB
All DBs
Position
6:89124663..89289526
Genome browser
AA seq
863 aa
AA seq
DB search
MQRRGALFSLPGGSGSRKMAAGDIGELLVPHMPKIRVPRSGDRVYKNECAFSYDSPNSEG
GLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHVREKVRGASGGALPKRRNSKIFLDL
DTDDDFNSDDYEYEDEAKLVIFPDHYEIVLPNIEELPALVTIACDAVLNSKSPYRKQDPD
TWESELPVSKYANNLTQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSA
GNGHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEEPVSDPQLAKHLAHFGIDMLHMHG
TENGLQDNDIKPRVSEWEVIQETGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEF
QRAYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQ
QNGISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEER
IQCCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELTRREAEANRRPLPELVRAKIP
FSACLQAFSEPDNVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFD
VSVDMPDLLDISHLRARGLQPGEEELPDISPPILIPDDSKDRLMNQLIDPSDIDESSVMQ
LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASIFG
ATGLDNQPPEEVISIITSMGFQRNQAVQALRASSNNLERALDWIFSHPEFEEDSNFVMEM
ENNANANIISEAKPEGPRVKDGSGMYELFAFISHMGTSTMSGHYVCHVKKEGRWVIYNDH
KVCASERPPKDLGYMYFYRRIPS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccggggcgccctgttcagcctgccgggcggcagcgggtccaggaagatggct
gcaggagacatcggcgagctgctggtgccccacatgcccaagatccgcgtgcccaggtcc
ggggaccgggtctacaagaacgagtgcgctttctcctacgactcgcccaattctgaaggt
ggactctatgtatgcatgaacacatttttggcctttggaagagaacatgtggaaagacat
tttcgaaaaacaggacagagtgtatacatgcatctgaagagacacgtgcgagagaaggta
agaggggcctctggtggagcattaccaaaaagaaggaattccaagatttttttagatcta
gatactgatgatgatttcaatagcgatgattatgaatatgaagacgaagccaaacttgtt
atattcccagaccactatgaaatagtactaccaaatattgaggagttaccagccctggta
acaattgcttgtgatgcagttctcaattcaaaatctccatatagaaagcaggacccagac
acatgggaaagtgagttgccagtctccaaatatgccaataatcttacccagctggacaat
ggggtcaggattcctcccagtggttggaagtgtgctcgctgtgacctgcgagaaaatctc
tggctgaatctcacagacggctcggtactttgtggcaagtggttcttcgacagctctgcg
ggcaacgggcatgcgctggagcattacagagacatgggctaccctctcgctgtgaaactg
ggaaccatcaccccggatggggcagatgtttattcttttcaagaagaggagcctgtttcg
gatcctcaattggccaagcacttagcacattttggaatcgatatgctccatatgcacggg
acggagaatggacttcaggacaatgacatcaagccaagggtcagcgaatgggaggtgatt
caggagacggggacaaagctgaaacccatgtatggccctgggtacactggtctcaagaac
ctgggcaacagctgctatctcagctctgttatgcaggccatcttcagcatccctgagttc
cagagagcgtatgtaggaaatcttccaagaatatttgactactctccgttagatcctaca
caagatttcaacacacagatgactaagttgggacatggccttctttcaggccagtattca
aaacctcctgtgaaatctgaactcattgaacaggtgatgaaggaggaacacaagcctcaa
cagaatggtatctctccacgtatgtttaaggccttcgtaagcaagagccacccagaattc
tcctctaatagacagcaagatgcccaggaattttttttgcacctggtgaatctggttgaa
aggaaccgcatcggctctgaaaacccaagtgatgttttccggtttttggtggaagaacgg
attcagtgctgtcagacccggaaagttcgctacacagagagggtagattacctgatgcag
ttacctgtggctatggaggcagcaaccaacaaggatgaactgattgcttatgagttgacg
agaagggaagcagaagcaaacaggagaccccttcccgagctggttcgtgccaagatcccc
tttagtgcctgccttcaagccttttcagaaccagataatgtggatgatttctggagcagt
gccctccaagccaagtcagcaggtgtcaaaacatctcgctttgcctcattccctgaatac
ttggtagtgcagataaagaagttcacttttggtcttgactgggtcccaaaaaaatttgat
gtttctgttgatatgccagacctacttgatatcagccatcttcgagccagggggttacaa
ccaggagaggaggaactcccagatatcagtcccccgatactcattcctgatgactcaaaa
gatcgcttgatgaaccaattgatagacccatcagacattgatgagtcatcagtgatgcag
ctggcggagatgggcttccccctggaagcatgtcggaaggctgtgtactttactggaaat
atgggagctgaggtggccttcaactggatcattgttcatatggaagagccagattttgct
gagccactcaccatgcctggttacggaggagcagcttctgctggagcctctatttttggt
gctacaggattggataaccaacctccagaggaagttatcagcattattacttccatggga
ttccagcgaaatcaggctgttcaggctctacgagcttcgagtaataacctggaaagagca
ctggattggatcttcagccaccctgagtttgaggaggacagcaactttgtgatggagatg
gaaaataatgccaatgcaaatattatttctgaagccaagcctgaaggacctagagtcaaa
gatggatctggaatgtatgaattatttgcattcatcagtcatatgggaacatcaacaatg
agtggccattatgtttgccatgtcaaaaaggagggaagatgggtgatctacaatgaccac
aaagtgtgtgcctcagaaagaccccccaaagacctgggctacatgtacttttaccgtagg
atacccagctaa
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