Suncus etruscus (white-toothed pygmy shrew): 126024735
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Entry
126024735 CDS
T09902
Symbol
COL1A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04151
PI3K-Akt signaling pathway
setr04510
Focal adhesion
setr04512
ECM-receptor interaction
setr04611
Platelet activation
setr04820
Cytoskeleton in muscle cells
setr04926
Relaxin signaling pathway
setr04933
AGE-RAGE signaling pathway in diabetic complications
setr04974
Protein digestion and absorption
setr05146
Amoebiasis
setr05165
Human papillomavirus infection
setr05205
Proteoglycans in cancer
setr05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
126024735 (COL1A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126024735 (COL1A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
126024735 (COL1A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
126024735 (COL1A2)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
126024735 (COL1A2)
09152 Endocrine system
04926 Relaxin signaling pathway
126024735 (COL1A2)
09154 Digestive system
04974 Protein digestion and absorption
126024735 (COL1A2)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
126024735 (COL1A2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
126024735 (COL1A2)
09174 Infectious disease: parasitic
05146 Amoebiasis
126024735 (COL1A2)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
126024735 (COL1A2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
126024735 (COL1A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
setr00536
]
126024735 (COL1A2)
Glycosaminoglycan binding proteins [BR:
setr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126024735 (COL1A2)
BRITE hierarchy
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
126024735
NCBI-ProteinID:
XP_049641154
EnsemblRapid:
ENSSRTG00000030541
LinkDB
All DBs
Position
1:87531470..87568524
Genome browser
AA seq
1375 aa
AA seq
DB search
MLSFVDTRTLLLLAVTSCLATCQYIYKDFICIFLXGPTGDRGPRGERGPPGPPGKDGADG
LPGLAGPPGPPGPPGLPGPPLLGENFAAQFDGKGVGLGPGPMGLMGPRGPPGVAGPPGAA
GFHGPPGEPGEPGQSGPAGPRGPTGPPGKAGEDGRPGKPGRPGERGVVGPQGARGFPGTP
GLPGFKGIRGHNGLDGLKGQPGTPGVKGEPGAPGENGTPGQAGARGLPGERGRVGGPGPA
GARGSDGSVGPVGPAGPLGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGARGEMGLPGVS
GPVGPAGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGASGPRGLVGEPGPA
GSKGEGGNKGEPGSAGPQGPPGPSGEEGKRGQNGEPGSAGPAGPPGLRGSPGSRGLPGAD
GRAGVMGPPGNRGASGPAGIRGPSGDSGRPGEPGLVGPRGFPGSPGNVGPAGKEGPMGLP
GIEGRPGAIGPAGPRGEPGNIGFPGPKGPNGEPGKSGERGHPGLAGNRGAPGPDGNNGAQ
GPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGGTGEVGKPGERGLPGEFGLPGPAGPRGER
GLPGQSGAAGPAGPLGSRGPSGPPGPDGNKGEPGVLGAPGTAGPSGGSGLPGERGAAGIP
GGKGDKGEPGLRGEIGSPGRDGARGIPGAVGAPGPSGASGDRGEAGPAGPAGPAGPRGSP
GERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGVVGPTGPVGAAGPSGPNGPP
GPVGGRGDGGPPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGLRGPRGDQGPVGRT
GETGASGLPGFAGEKGPSGEPGTTGPPGTPGPQGILGSPGILGLPGTRGERGLPGIAGSL
GEPGPLGISGPPGARGPPGAVGNPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERGYP
GNAGPVGAVGAPGPHGSVGPTGKHGNRGEPGPAGAVGPVGAFGPRGPSGPQGIRGDKGEP
GDKGARGLPGLKGHNGLQGLPGLAGHHGDQGAPGSVGPAGPRGPAGPSGPVGKDGRTGQP
GTVGPAGIRGSQGNQGPAGPPGPPGLPGPPGPSGGGYDFGFEGDFYRADQPRSPPSLRPK
DYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPDWSSGYYWIDPNQGCTMDAI
KVHCDFSTGETCIKAQPESIPVKNWYKNSKIQKHIWFGETINGGTQFEYNIEGVTTKEMA
TQLAFMRLLANHASQNITYHCKNSIAYMDDETGNLKKAVILQGSNDVELVAEGNSRFTYS
VLEDGCSKKTNEWSKTVIEYKTNKPSRLPILDIAPLDIGGADQEFYLDIGPVCFK
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacgcggactttgttgctgcttgcagtaacttcgtgcctagca
acatgccaatatatttataaagatttcatttgtatttttttgtagggtccaactggagat
aggggacctcgtggagaaaggggcccaccaggcccaccaggcaaagatggtgctgatggt
cttccaggccttgctggtccacctggtccacctggtccacctggtctacctggaccccct
cttcttggagagaactttgctgctcagtttgatggaaaaggagttggactaggccctgga
ccaatgggtttaatgggacccagaggccctcctggtgtagctggaccccctggagctgct
ggtttccatggccctccaggtgaacctggagaacctggtcaaagtgggcctgctggtcct
cgtggtcccactggtcctcctggcaaagctggtgaagatggtcgccctggaaagcccgga
aggcctggtgagagaggagttgttggaccacagggtgctcgtggtttccctggaactcct
ggacttcctggcttcaagggtattcgtggacacaatggtctggatggattaaagggacaa
cctggtaccccaggtgtgaagggtgagcctggtgcccccggtgaaaatggaaccccaggt
caagctggagctcgtgggcttcctggtgagagaggacgtgttggtggccctggcccagct
ggtgcccgtggaagtgatggaagtgtgggacctgtgggtcctgctggtccccttggatct
gctggccctccaggcttccctggtgcccctggccccaagggtgaacttggacctgttggt
aaccctggtcctgctggtcctgctggtgcacgtggtgaaatgggtcttccaggtgtttct
ggccctgttggacctgctggtaaccctggagccaatggccttactggtgctaagggagct
gctggcctgcctggtgttgctggggctcctggtctccccgggccccgtggtattcctggc
cctgttggtgctgctggtgctagtggtcctagaggacttgttggtgagcctggtccagct
ggttccaaaggagaaggtggtaacaagggtgaacctggctctgcagggcctcaaggtcct
cctggtcccagtggtgaagaaggaaagagaggccaaaatggtgaacctggatctgctggt
cctgcaggaccacctggcctgagaggaagtcctggttctcgtggtcttcctggagcagat
ggtagagctggtgtcatgggccctcctggtaatcgtggtgcgagtggcccagctggtatc
cgaggtcccagtggagattctggtcgccctggagagcctggcctggtgggacccaggggt
tttcctggttcccctggaaatgttggcccagctggtaaagaaggtcctatgggccttcca
ggtattgaaggcaggcctggagctattggcccagctggaccaagaggagagcctggtaac
attggattccctggacccaaaggccccaatggtgaacctggcaaaagtggtgagagaggt
catcctggtcttgctggtaatcggggtgctccaggtcctgatggaaacaatggtgctcag
ggacctcctggaccacaaggtgtccaaggtggaaaaggtgaacagggccccgctggacct
ccaggcttccagggtcttccaggtccttcaggaggaactggtgaagttggaaaaccagga
gaaaggggtctccctggtgaatttggactccctggtcctgctggcccaagaggggagcga
ggtctcccaggtcaaagtggtgctgctggtcctgctggtcctcttggaagccgaggtcct
tctggacccccagggcctgatggaaacaagggtgaacctggtgtgcttggtgctcctggc
actgctggtccatctggaggtagtggacttccaggagagaggggtgctgctggaatacct
ggaggcaagggagataagggtgaacctggtctcaggggtgaaatcggtagcccaggcaga
gatggtgctcggggtattcctggtgctgtaggtgccccaggtccttctggagcttctggt
gaccggggcgaagctggtcccgctggtcctgctggtcctgctggtcctcgtggcagtcct
ggtgaacgtggtgaagttggtcctgctggccccaatggatttgctggacctgctggtgct
gctggtcaacctggtgctaaaggagagagaggaaccaaagggcccaagggtgaaaatggt
gttgtcggtcctacaggccctgttggagcagctggcccatctggtccaaatggtccccct
ggtcctgttggaggtcgtggtgatggtggaccccctggtatgactggcttccctggtgct
gctggaaggactggtccccctgggccttctggtattactgggccccctggccctcctggt
gctgctggtaaagaaggcctccgtggtcctcgtggtgaccagggtccagttggtcgaact
ggagaaacaggtgcatctggcctcccaggctttgctggtgagaagggtccatctggagaa
cctggtactactggacctcctggcacaccaggacctcagggtattcttggttcccctggt
attttgggtctcccaggcaccagaggtgaacgtggtctaccaggtattgcaggatctctg
ggtgaacctggacctcttggcatttctggccctcctggggcccgtggtccccctggtgct
gtgggaaatcctggtgtcaatggtgctcctggtgaagctgggcgtgatggcaatcctggg
agtgatggtcccccaggccgtgatggtcaagctggacataagggagagcgtggatatcct
ggcaatgctggtcctgttggtgctgtgggggcacctggtcctcatggctctgtgggcccc
actggcaaacatggaaatcgtggtgaacctggtcctgctggagcagttggtcctgttggt
gcctttggtccaagaggccctagtggaccacaaggaattcgaggtgacaagggagagcct
ggtgataaaggagcaagaggtcttcctggcctaaagggacacaatggattgcaaggtctt
cctgggcttgctggtcaccatggtgatcaaggtgcacctggctccgtgggtcctgctggt
cctaggggccctgctggtccttctggccctgttggcaaagatggtcgcactggacaacct
ggcacagttggacctgctggcattcgtggttcccagggtaaccaaggtcctgctggccct
cctggtcctcctggtcttcctggccctcctggtcctagtggtggtggttatgactttggt
tttgaaggagacttctacagggctgaccagcctcgttcaccaccttctctcagacctaag
gattatgaagttgatgctacactgaaatctctcaacaatcaaattgagactcttcttact
cctgaaggatctaggaagaacccagctcgcacatgccgtgacttgagattgagccaccca
gactggagcagtggatactactggattgatcctaaccaaggttgtactatggatgctatc
aaagtacactgtgatttctctactggtgaaacttgcatcaaggctcaacctgaaagcatc
ccagtcaagaactggtacaaaaattctaagatccaaaagcacatctggtttggagaaacc
atcaatggtgggactcagtttgaatacaatattgaaggagttactactaaggaaatggct
acccaacttgcctttatgcgcctactggccaaccatgcctctcaaaatatcacttaccac
tgcaagaacagcattgcatatatggatgatgaaactggcaacctgaaaaaagctgtcatt
ctacaaggctccaatgatgttgaacttgttgctgagggcaatagcaggttcacttacagt
gttcttgaagatggctgctctaaaaagacgaatgaatggagtaagaccgtcattgaatac
aaaacgaataagccatctcgcctgcctatccttgatattgcacctttagacatcggtggt
gccgaccaagaattctatttggacattggcccagtctgtttcaaataa
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