Suncus etruscus (white-toothed pygmy shrew): 126030291
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Entry
126030291 CDS
T09902
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03013
Nucleocytoplasmic transport
setr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126030291 (UPF1)
03015 mRNA surveillance pathway
126030291 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126030291 (UPF1)
Enzymes [BR:
setr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126030291 (UPF1)
5.6.2.5 RNA 5'-3' helicase
126030291 (UPF1)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126030291 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
126030291 (UPF1)
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
126030291
NCBI-ProteinID:
XP_049644427
EnsemblRapid:
ENSSRTG00000015614
LinkDB
All DBs
Position
15:complement(91864224..91874731)
Genome browser
AA seq
1129 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGAGGAGAAG
AAGQLDAQVGGPEGILQNGAVDENVAKTSQLLAELNFEEDEEDAYYTKDLPLHACSYCGI
HDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGC
RNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSE
QEQLRARQITAQQINKLEELWKENPCATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGP
LVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLM
QGDEICLRYKGDLAPLWKGIGHVIKVPDSQDLTRAADYGDEIAIELRSSVGAPVEVTHNF
QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIVKCQLPKRFTAQGLP
DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
SSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPLPPPGYFGQANGPAAGRG
APKGKTGRGGRQKHRFGLPGPSPATLPSSQASQDAASQAFSQGALTQAYMAMSQPSQMSQ
PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacacggaggag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcacgctc
cccagccagacgcagacgccgcccgggggccccggcgcgggcggagcgggcgccgcgggc
gcggccgggcagctcgacgcgcaggtcggaggccctgagggcatcctgcagaatggggcg
gtggacgagaacgtggccaagaccagccagctgctggccgagctcaacttcgaggaggac
gaagaggacgcctactataccaaggacctgcctttgcatgcctgcagctactgcggcatc
catgacccagcgtgcgtggtttactgcaacaccagcaagaagtggttctgcaacggccgt
ggaaacacatccggcagccacatcgtgaaccacctggtgcgggccaagtgcaaggaggtg
acgctgcacaaggacgggcctttgggtgagacggtgctcgagtgctacaactgtggttgt
cgcaacgtcttcctgctgggcttcatccccgccaaggccgactcggtggtggtgctgctg
tgccgtcagccctgcgccagccagagcagcctcaaggacatcaactgggacagctcgcaa
tggcagccgctcatccaggaccgctgcttcctgtcatggctcgtcaagatcccatcggag
caggagcagctgcgcgcacgccagatcacggcgcagcagatcaacaagctggaggagctg
tggaaggagaacccttgcgccaccctagaggacttggagaagccgggcgtggacgaggag
ccacagcacgtgctcctgcgctacgaggacgcctaccagtaccagaacatcttcgggccc
ctcgtcaagctcgaggccgactacgacaagaagctcaaggagtcccagactcaagataac
atcacagtcaggtgggacctgggccttaacaagaagagaatcgcctacttcactttgccc
aagactgactctggtaatgaggatttagtcataatttggttacgagacatgcggctcatg
cagggtgacgagatctgcctgcgctacaagggtgacctggcgcccctgtggaagggcatc
ggccatgtcatcaaggtcccggacagccaggacttgactcgggccgcagactatggtgac
gagattgccatcgagctgcgaagcagcgtgggtgcgcccgtggaggtgacgcacaacttc
caggtggacttcgtgtggaagtccacgtccttcgaccgcatgcagagtgcgctcaagacc
ttcgccgtggacgagacgtccgtgtcgggctacatctaccacaagttgctgggccatgag
gtggaggacgtgatcgttaagtgccagctgcccaagcgcttcacggcccaggggctgccc
gaccttaaccactcgcaggtctacgcggtgaagacggtgctgcagcggccgctgagcctc
atccagggcccgcccggcacgggcaagaccgtcacctcggccaccatcgtgtaccacctg
gcccggcagggcaacgggcctgtgctcgtgtgcgcgcccagcaacatcgcggtggaccag
ctgacggagaagatccaccagacggggctgaaggtggtgcggctttgcgccaagagccgc
gaggccattgactcgcccgtgtccttcctggcgctgcacaaccagatccgcaacatggac
agtatgccggagctgcagaagctgcagcagctcaaggatgagacaggcgagctgtcgtca
gctgacgagaagcggtacagggccctgaagcgcacagctgaacgtgagctgctcatgaat
gcagacgtcatctgctgcacatgcgtgggtgcaggcgacccccggctggccaagatgcag
ttccgctccatcctcatcgatgagagcacgcaggccaccgagcccgagtgtatggtgcct
gtggtcctgggcgccaagcagctcatcctggtgggcgaccactgccagctgggcccagtg
gtgatgtgcaagaaggcggccaaggcggggctgtcgcagtccctgttcgaacgcctggtg
gtgctgggcattcggcccatccggctgcaggtgcagtaccgcatgcacccggccctcagc
gccttcccctccaacatcttctacgagggctccctgcagaacggcgtcacggccgctgac
cgcgtcaagaagggcttcgacttccagtggccacagcccgacaagcccatgttcttctat
gtgacccagggccaggaggagatcgccagctcaggcacctcctacctcaaccggacagag
gcggccaacgtggagaagatcaccacaaagctgctcaaggcgggcgccaagccggaccag
attggcatcatcacgccctacgagggccagcgctcctacctggtgcagtacatgcagttc
agcggctccctgcacaccaagctctaccaggaggtggagattgccagcgtggacgcattc
cagggccgggagaaggatttcatcatcctgtcgtgtgtccgcgccaacgagcaccagggc
atcggcttcctcaatgacccgcggcgcctcaacgtggcactgacccgtgctcggtatggg
gtgatcatcgtgggcaaccccaaggccctgtcaaagcagccgctgtggaaccacctgctg
aactactacaaggagcagaaggtgctggtcgaggggcccctcaacaacctgcgcgagagc
ctcatgcagttcagcaaacctcgcaagctggtcaacaccatcaacccgggtgcccgcttc
atgaccacagccatgtacgatgcccgcgaggccatcatcccgggctccgtgtatgatcgc
agcagccagggccggccttccaacatgtacttccagacgcacgaccagattggcatgatc
agcgctggccccagtcacgtggcagccatgaacatcccgatccccttcaacctggtcatg
ccacccctgccaccacccggctactttggccaggccaacgggcccgctgcaggccgggga
gcccccaaaggcaagacgggccgcgggggccgccagaaacaccgctttggcctcccgggg
cccagccccgccacgctgcccagcagccaggccagccaggatgcagcatcgcaggccttc
tcgcagggcgcgctgacgcaggcctacatggccatgagccagccgtcgcagatgagccag
cccggcctgtcgcagcccgaactgtcccaggacagctacctcggtgacgagttcaagtcc
cagatcgacgtggcgctgtcgcaggactccacgtaccagggcgagcgggcctaccagcat
gggggcgtcacggggctgtcccagtactag
DBGET
integrated database retrieval system
