Saccharomyces eubayanus: DI49_2030
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Entry
DI49_2030 CDS
T08138
Name
(RefSeq) UPF3-like protein
KO
K14328
regulator of nonsense transcripts 3
Organism
seub
Saccharomyces eubayanus
Pathway
seub03013
Nucleocytoplasmic transport
seub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
seub00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
DI49_2030
03015 mRNA surveillance pathway
DI49_2030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seub03019
]
DI49_2030
Messenger RNA biogenesis [BR:
seub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
DI49_2030
mRNA cycle factors
P-body specific factors
DI49_2030
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF4278
Motif
Other DBs
NCBI-GeneID:
28931167
NCBI-ProteinID:
XP_018222283
UniProt:
A0A0L8RJE8
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Position
VII:615244..616416
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AA seq
390 aa
AA seq
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MSNPAGESKNSEGKKKYRGNRYHNNKNRGKNKNEDSKKNEDSKKNEGKVNNGSVSSGSKN
KRNNKKRNREHYNYKRKPKSGKSTENEGYKLVVRLLPPNLTADDFFAIIGNTNSDSDDKE
GIQDKFKYSDWCFFEGHYSSKVFKNSTYSRCNFLFDGLQDLEKFADFIKTCKFIDNKDNI
TTPDLKLSPYVKKFTQTSKKDSAQEGTIEEDEIFKTFMNSMKQLNENDEYSFQDFSVLKS
LDKEFSRSLELENKIAERTERVLTELVGAGDKVKSKNKKKKNKNGKKKYQDEESSNKIPK
KKRNRNKKKHDDREKSSATKTKNSNVVIIEEAGKEVLKQRKKKMLLQEKLKQSNSSQPQS
PSTQAQSSFKFKENTSISRVKILHRDDTEK
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatccggctggagaatcgaagaatagtgaagggaagaagaaatatagaggaaat
aggtatcacaacaataagaatagaggtaaaaacaagaatgaggactctaaaaagaatgag
gattctaaaaagaatgagggcaaggtaaataacggtagtgtcagcagcggcagtaaaaac
aagagaaacaacaaaaagaggaacagagagcattataactacaaaaggaaacctaaatct
ggtaaatcgactgaaaatgaaggatacaaacttgtcgtcagattattacctccgaatctg
acggcagacgacttctttgccattataggaaacaccaatagcgacagtgatgataaagaa
ggtattcaggataaatttaagtatagtgattggtgtttttttgaaggtcattattctagt
aaagtattcaagaactcaacgtattcaaggtgcaattttctgtttgatggcttacaagat
ttggaaaagttcgcagatttcataaaaacttgtaaattcattgataacaaggacaatatt
acaaccccagacttgaaactttcgccatacgtgaaaaagttcacacaaacgtcgaagaag
gactcggcacaagaggggaccatwgaagaagatgaaatcttcaaaacatttatgaattct
atgaagcagctcaacgaaaatgatgaatactcatttcaggactttagtgtcttgaagtcc
ttggacaaagaattctcaaggagtctagagttggagaacaagatagcagagaggactgaa
agggtattaacagaactagttggtgctggtgacaaggtcaaaagtaagaacaagaagaaa
aaaaacaaaaatggcaaaaagaaatatcaagacgaggaatcaagcaataaaattcccaag
aagaagcggaatagaaacaaaaagaagcacgatgaccgtgagaaaagcagtgccaccaag
actaagaatagcaacgtggtgataattgaggaggcgggtaaagaagtgttaaaacaaagg
aagaagaagatgcttttgcaagagaagttaaagcaatctaattcttctcagcctcaatcc
ccatccactcaagcgcagtcgtcgttcaaattcaaagaaaatacatcgatatcacgagtc
aaaattctacatcgagatgataccgagaagtga
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