Streptomyces pratensis: Sfla_1982
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Entry
Sfla_1982 CDS
T01647
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sfa
Streptomyces pratensis
Pathway
sfa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Sfla_1982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfa03400
]
Sfla_1982
Enzymes [BR:
sfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Sfla_1982
DNA repair and recombination proteins [BR:
sfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Sfla_1982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ADW03416
UniProt:
A0A8D3WGU0
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All DBs
Position
2409455..2410348
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AA seq
297 aa
AA seq
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MTPIAEVEGRRLTLSNLDKVLYPATGTTKGEVLHYYAATAARVMLPHLRDRPLSFLRYPD
GPEGLRFFTKNPPPGTPDWVRTAPVPRSDDPGARQVLAQDLPSLMWAANLVVEFHTHQWR
QDSPAVADRMVFDLDPGPPAGVVECCAVALWLRERLAGDGLSAHGKTSGSKGLHLLVPLE
PTPSGKVTAYAKKLAVEAQGALPELAVHRMTRALRPGKVFVDFSQNAAAKTTAAPYTLRA
KARPTVSAPVTWEEIEECGAPDDLVLLAGDMAARLERHGDLLAPLNDPGQAGALPGG
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcgcggaggtggaggggcggcgcctgacgctcagcaatctcgacaaggtg
ctgtatccggccaccgggacgaccaagggcgaggtgctgcactactacgcggccacggcg
gcgcgggtcatgctgccgcatctgcgggaccgcccgctgtcgttcctgcggtatccggac
ggccccgaggggctgcgcttcttcaccaagaacccgccgcccggtacacccgactgggtg
cgcaccgccccggtgccccgcagcgacgaccccggcgcccgtcaggtcctcgcccaggac
ctgccgtcgctgatgtgggcggcgaacctggtggtggagttccacacccaccagtggcgg
caggactcccccgccgtggccgaccggatggtgttcgacctggaccccggtccgcccgcg
ggtgtcgtggagtgctgcgcggtcgccctctggctgcgggagcggctggccggggacggg
ctgtccgcgcacgggaagacctccggctccaaggggctccatctgctcgtccccctggag
ccgaccccctccgggaaggtgacggcgtacgcgaagaagctcgcggtcgaggcacagggc
gcgctgcccgaactggccgtgcaccggatgacgcgtgcgctgcgcccggggaaggtgttc
gtggatttcagccagaacgccgcggccaagacgaccgccgcgccctacaccctgcgggcg
aaggcccgcccgacggtgtccgcgcccgtcacctgggaggagatcgaggagtgcggggcg
ccggacgatctcgtcctgctcgccggtgacatggccgcccgcctggagcggcacggggat
ctcctcgctccgctgaacgatcccgggcaggccggggctctccccgggggctga
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