Streptomyces pratensis: Sfla_3789
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Entry
Sfla_3789 CDS
T01647
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfa
Streptomyces pratensis
Pathway
sfa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sfla_3789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfa03400
]
Sfla_3789
Enzymes [BR:
sfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sfla_3789
DNA repair and recombination proteins [BR:
sfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sfla_3789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADW05206
UniProt:
A0A8D3WHH8
LinkDB
All DBs
Position
4357402..4360932
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDVVVTDPALSEAVKAASDGHRAHVDLVGPPAARPFAVAALAREAGRTVLAVTA
TGREAEDLAAALRTLLPPDTVAEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVKVVVAPVRSVLQPQVKGLGDLEPVALSSGRTADLGEVVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKIADQRSLEVAAHGLWAPPCRELL
LTEDVRTRAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPKGSMAL
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRERARELGMM
WWSTSPFAADEELDGDTLKLGMHAPEAYRGDTARALADTKGWLAEGWRTVYVTEGQGPAS
RTVEVLGGEGIAARLDPDLADLAPSLVHVSCGAIDHGFVDPALKLAVLTETDLTGQRTAS
KDLGRMPARRRKSIDPLTLQAGDFIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYSA
RMAAPGHAFGPDTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYAQFPVNVRALSRFQSDTESKA
TLEGLKDGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMGESQLEQVVVDFWEKRFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYSYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAAVDGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEDDIRAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQELRLKRLHPKTIFKPATR
QILVPRPTAGRIGGKPVVGRELLSWTGEFLTTILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggacgtcgtcgtcaccgacccggcgctctccgaagcggtg
aaggccgcatccgacggtcaccgggcccacgtcgacctggtcggcccgcccgccgcacgc
cccttcgccgtggccgcgctggcccgcgaggccggacgcaccgtgctggccgtcaccgcc
accggccgcgaggccgaggacctggccgcggcgctgcggaccctgctgccccccgacacc
gtggcggagttcccctcctgggagaccctgccccacgagcggctctcgccccgctccgac
accgtcggccgccgtctcgccgtgctgcgcaggctcgcgcacccccggccggacgacccg
gagaccggcccggtcaaggtcgtcgtcgcaccggtgcgttccgtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtggcgctgagcagtgggcggaccgcggatctgggc
gaggtcgtggacgcactcgcggcagcggcgtacgcccgtgtcgagctggtcgagaagcgc
ggggagttcgccgtgcgcggcgggatcctggacgtcttcccgccgaccgaggagcacccc
ctccgggtcgagttctggggcgacgacgtcgaggagatccgctacttcaagatcgccgac
cagcggtccctggaggtcgccgctcacgggctgtgggccccgccctgccgtgagctgctg
ctcaccgaggacgtgcgcacccgggcggcggccctcgccgaggcgcacccggagctgggc
gagctgctggggaagatcgccgagggcatcgccgtcgagggcatggagtcgctggccccg
gtgctggtcgacgagatggagctgctgctggacgtcctgccgaagggctcgatggcgctg
gtctgcgacccggagcgggtgcggacgagggcggcggacctcgtggcgaccagccaggag
ttcctccaggcgtcctgggcggccaccgcgggcgggggagaggccccgatcgacgtgggc
gcggcctccctgtggggcatcgccgacgtccgtgagagggcccgtgagctgggcatgatg
tggtggtccacctctccgttcgccgccgacgaggagctggacggggacaccctgaagctc
gggatgcacgccccggaggcgtatcggggcgacacggcccgggcgctcgccgacaccaag
gggtggctggccgagggctggcgcacggtgtacgtcacggaggggcagggcccggcctcc
cgtacggtcgaggtgctgggcggcgagggcatcgcggccaggctcgacccggacctggcc
gatctcgcgccctcgctcgtccacgtctcgtgcggggcgatcgaccacggcttcgtcgat
ccggcgctgaagctggccgtgctgaccgagacggacctgaccgggcagcggaccgccagc
aaggacctgggacggatgccggcccggcgccgtaagtccatcgacccgctgaccctgcag
gcgggcgacttcatcgtccacgagcagcacggggtcggccggtacatcgagatggtccag
cgcaccgtgcagggcgcgacccgcgagtacctcctcgtcgagtacgcccccgccaagcgc
gggcagcccggcgaccggctctacatccccacggaccagctggagcaggtcaccaagtac
gtcggcggcgaggccccgaccctgcaccggctcggcggcgccgactggacgaagacgaag
cagcgggccaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtactcggcg
cgcatggcggcgcccggccacgccttcgggccggacaccccgtggcagcgtgagctggag
gacgccttcccgtacgcggagacgcccgaccagctgtccacgatcgccgaggtcaaggag
gacatggagaagtccgtcccgatggaccggctgatctgcggtgacgtcgggtacggcaag
acggagatcgcggtgcgcgcggccttcaaggcggtccaggacggcaagcaggtcgcggtg
ctcgtgccgacgacgctcctggtccagcagcacttcggcacgttcaccgagcggtacgcg
cagttcccggtcaacgtgcgggcactgagccggttccagtccgacaccgagtcgaaggcg
acgctggaggggctcaaggacgggtccgtggacctggtcatcggcacgcaccggctgttc
tcgtcggagacgaagttcaaggacctgggtctggtcatcgtcgacgaggagcagcgcttc
ggtgtcgagcacaaggagcagctgaagaagctccgggccaacgtggacgtgctcacgatg
tcggcgacccccatcccccgtacgctcgaaatggccgtcacgggcatccgcgagatgtcg
acgatcacgacgcccccggaggagcggcaccccgtcctcacgttcgtcgggccgtacgag
gagaagcagatcggcgcggccgtgcgccgtgaactcctgcgtgagggacaggtcttctac
atccacaaccgggtcgagtccatcgaccgggccgcggccaggctgcgcgagatcgtgccc
gaggcgcggatcgcgacggcgcacgggcagatgggcgagagccagctggagcaggtcgtc
gtcgacttctgggagaagaggttcgacgtgctggtctcgacgacgatcgtcgagtccggt
atcgacatctcgaacgccaacacgctgatcgtggagcgcggcgacaacttcgggctctcg
cagctgcaccagctgcgtggccgtgtcggccgcggccgggaccggggctactcctacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgagcgtctggcgacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcggggaacctgctcggcggtgaacagtccggccacatcgcgggggtcggcttcgacctg
tacatccggatggtcggcgaggcggtggcggactaccgggccgccgtggacggcggggtg
gaggaggagccgccgctggaggtcaagatcgagctgccggtcgacgcgcacgtcccgcac
gactacgccccgggggagcggctgcgcctccaggcgtaccgtgccatcgcctccgcgaac
tcggaggacgacatccgggcggtgcgcgaggagctcaccgaccgctacggcaagctgccg
gagccggtggagaacctcctgctggtggcgggcctgcggatgctggcccgggcctgcggg
gtgggcgagatcgtgctgcaggggtcgaacatccgcttcgcgccggtggagctgcgcgag
tcgcaggagctgcggctgaagcggctgcaccccaagacgatcttcaagccggccacgcgt
cagatcctggtaccgcgcccgaccgcggggcggatcggcgggaagccggtggtggggcgc
gaactcctctcgtggaccggggagttcctcacgacgatcctggggtcgtag
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